C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type XII, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032332 Col12a1 10090 - 9:79598991-79718831 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000071750 Col12a1-001 79598991-79718518 protein_coding
  ENSMUST00000121227 Col12a1-002 79601759-79718720 protein_coding
  ENSMUST00000122827 Col12a1-004 79712534-79718831 retained_intron
  ENSMUST00000135009 Col12a1-003 79598991-79612970 protein_coding
  ENSMUST00000141667 Col12a1-005 79714905-79718494 retained_intron
  ENSMUST00000150289 Col12a1-006 79692028-79718720 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000071750ENSMUST00000121227ENSMUST00000122827ENSMUST00000135009ENSMUST00000150289
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000071750 1.360±1.14 0.363±0.00 7.274±1.63 1.512±1.14 1.837±0.63 4.342±0.72 0.190±0.05 0.728±0.28 0.224±0.17 2.568±1.26 0.311±0.13 2.843±1.02 3.606±1.72 1.184±0.57
ENSMUST00000121227 N/A N/A N/A N/A N/A N/A N/A N/A 0.055±0.00 N/A N/A N/A N/A N/A
ENSMUST00000122827 N/A 1.075±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135009 1.226±0.08 2.410±0.30 41.586±0.00 2.641±1.32 1.836±0.50 10.624±0.50 0.295±0.04 2.021±0.17 0.736±0.34 6.045±1.30 1.135±0.38 5.392±1.18 7.091±4.08 1.017±0.00
ENSMUST00000150289 N/A 1.638±0.41 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.383±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00061X CIL_00061X_0003 CGP 9:78615546-79718831
CIL_000624 CIL_000624_0004 CGP 9:79598991-79759853

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005581 IEA collagen trimer
GO:0005615 IEA extracellular space
GO:0007155 IEA cell adhesion
GO:0031012 IDA extracellular matrix
GO:0031982 IEA vesicle
GO:0035987 IEA endodermal cell differentiation
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019601 col12a1b collagen, type XII, alpha 1b protein_coding Danio_rerio
ENSDARG00000078322 col12a1a collagen, type XII, alpha 1a protein_coding Danio_rerio
ENSG00000111799 COL12A1 collagen, type XII, alpha 1 protein_coding Homo_sapiens

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