C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type XII, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000111799 COL12A1 9606 - 6:75084326-75206051 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000322507 COL12A1-001 75084326-75206051 protein_coding
  ENST00000345356 COL12A1-002 75086471-75205851 protein_coding
  ENST00000416123 COL12A1-009 75086547-75202792 protein_coding
  ENST00000419671 COL12A1-007 75133376-75152189 protein_coding
  ENST00000425443 COL12A1-008 75084326-75119473 protein_coding
  ENST00000474564 COL12A1-005 75143204-75146285 retained_intron
  ENST00000483888 COL12A1-003 75087190-75205822 protein_coding
  ENST00000486533 COL12A1-004 75177652-75188464 retained_intron
  ENST00000493109 COL12A1-006 75113022-75119058 protein_coding
  ENST00000511023 COL12A1-010 75089160-75101911 processed_transcript
  ENST00000611354 COL12A1-201 75084326-75205907 protein_coding
  ENST00000615798 COL12A1-202 75084326-75205907 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000322507ENST00000345356ENST00000416123ENST00000419671ENST00000425443ENST00000483888ENST00000486533ENST00000511023ENST00000611354ENST00000615798
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000322507 N/A N/A N/A N/A 9.556±0.00 3.144±0.00 1.039±0.00 0.159±0.00 9.556±0.00 2.050±1.09 N/A 8.090±3.88 0.421±0.33 N/A
ENST00000345356 N/A N/A N/A 0.415±0.00 7.620±0.00 10.822±0.00 1.238±0.00 1.961±0.00 8.218±0.00 1.971±0.00 0.884±0.00 21.072±0.00 N/A 2.270±1.89
ENST00000416123 N/A N/A N/A 0.409±0.00 6.663±0.00 N/A N/A 0.589±0.00 N/A 2.821±0.00 N/A N/A N/A N/A
ENST00000419671 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.400±0.00 N/A N/A N/A
ENST00000425443 33.937±0.00 19.055±0.00 N/A 0.410±0.00 18.638±0.00 17.046±0.00 2.493±0.00 4.378±0.00 0.449±0.00 2.733±0.00 N/A 21.296±14.01 1.455±0.69 4.595±3.09
ENST00000483888 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.394±5.14 N/A N/A
ENST00000486533 N/A N/A 6.028±0.00 N/A N/A N/A N/A N/A N/A 7.996±0.00 N/A N/A N/A N/A
ENST00000511023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.430±0.00
ENST00000611354 N/A N/A N/A 0.267±0.17 2.580±0.00 5.851±0.00 0.377±0.00 0.835±0.00 N/A N/A 0.676±0.00 N/A N/A N/A
ENST00000615798 7.205±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00061X CIL_00061X_0002 CGP 6:73695785-75206051
CIL_000624 CIL_000624_0003 CGP 6:75084326-75250323

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 TAS skeletal system development
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005595 NAS collagen type XII trimer
GO:0005615 IDA extracellular space
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007155 IEA cell adhesion
GO:0022617 TAS extracellular matrix disassembly
GO:0030020 NAS extracellular matrix structural constituent conferring tensile strength
GO:0030198 TAS extracellular matrix organization
GO:0030199 NAS collagen fibril organization
GO:0030574 TAS collagen catabolic process
GO:0031012 IDA extracellular matrix
GO:0031982 IDA vesicle
GO:0035987 IEP endodermal cell differentiation
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019601 col12a1b collagen, type XII, alpha 1b protein_coding Danio_rerio
ENSDARG00000078322 col12a1a collagen, type XII, alpha 1a protein_coding Danio_rerio
ENSMUSG00000032332 Col12a1 collagen, type XII, alpha 1 protein_coding Mus_musculus

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