C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000079146 smarcal1 7955 + 9:53944230-54040689 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000038508 smarcal1-201 53997177-54022757 protein_coding
  ENSDART00000112984 smarcal1-202 53944230-53969495 protein_coding
  ENSDART00000122786 smarcal1-203 53946694-54040689 protein_coding
  ENSDART00000127514 smarcal1-204 54018121-54025676 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000038508ENSDART00000112984ENSDART00000122786ENSDART00000127514
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000038508 0.220±0.00 0.252±0.00 N/A 0.030±0.00 0.140±0.00
ENSDART00000112984 0.124±0.00 N/A N/A 0.050±0.00 N/A
ENSDART00000122786 0.278±0.00 N/A 1.177±0.00 0.054±0.00 N/A
ENSDART00000127514 N/A 0.202±0.14 N/A 0.074±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000AN CIL_0000AN_0001 CGP 9:53894546-54040689

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0004386 IEA helicase activity
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0016568 IEA chromatin modification

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000138375 SMARCAL1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 protein_coding Homo_sapiens
ENSMUSG00000039354 Smarcal1 SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 protein_coding Mus_musculus

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