C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0000AN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000056439-ENSDARG00000079146 CGP 7955 9:53894546-54040689
GeneTranscriptPositionBiotype
ENSDARG00000036895 (dap1b)
death associated protein 1b
ENSDART00000053568 (dap1b-201) 53975568-53979084 protein_coding
ENSDARG00000056439 (march4)
membrane-associated ring finger (C3HC4) 4
ENSDART00000078939 (march4-201) 53894546-53941137 protein_coding
ENSDARG00000079146 (smarcal1)
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1
ENSDART00000038508 (smarcal1-201) 53997177-54022757 protein_coding
ENSDART00000112984 (smarcal1-202) 53944230-53969495 protein_coding
ENSDART00000122786 (smarcal1-203) 53946694-54040689 protein_coding
ENSDART00000127514 (smarcal1-204) 54018121-54025676 protein_coding
CIL_0000AN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000144583-ENSG00000138375 CGP 9606 2:216257865-216483053
GeneTranscriptPositionBiotype
ENSG00000144583 (MARCH4)
membrane-associated ring finger (C3HC4) 4, E3 ubiquitin protein ligase
ENST00000273067 (MARCH4-001) 216257865-216372027 protein_coding
ENSG00000231092 (AC012513.6)
ENST00000417481 (AC012513.6-001) 216259595-216266130 antisense
ENSG00000233581 (AC069155.1)
ENST00000452736 (AC069155.1-001) 216303325-216321737 antisense
CIL_0000AN_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039372-ENSMUSG00000039354 CGP 10090 1:72427112-72633134
GeneTranscriptPositionBiotype
ENSMUSG00000039354 (Smarcal1)
SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1
ENSMUST00000047615 (Smarcal1-001) 72583251-72633134 protein_coding
ENSMUST00000126832 (Smarcal1-010) 72616522-72628299 retained_intron
ENSMUST00000133123 (Smarcal1-008) 72583251-72595831 protein_coding
ENSMUST00000136498 (Smarcal1-005) 72583251-72626916 retained_intron
ENSMUST00000145868 (Smarcal1-007) 72583251-72585991 protein_coding
ENSMUST00000150725 (Smarcal1-004) 72585638-72626916 retained_intron
ENSMUST00000152225 (Smarcal1-006) 72583615-72633134 protein_coding
ENSMUST00000152814 (Smarcal1-002) 72583251-72596271 retained_intron
ENSMUST00000156797 (Smarcal1-003) 72583251-72599399 retained_intron
ENSMUSG00000039372 (March4)
membrane-associated ring finger (C3HC4) 4
ENSMUST00000047786 (March4-001) 72427112-72536930 protein_coding
ENSMUSG00000085812 (Gm15843)
predicted gene 15843
ENSMUST00000146593 (Gm15843-001) 72459499-72460027 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000AN_0001ENSDARG00000036895ENSDART00000053568ENSDARG00000056439ENSDART00000078939ENSDARG00000079146ENSDART00000038508ENSDART00000112984ENSDART00000122786ENSDART00000127514CIL_0000AN_0002ENSG00000144583ENST00000273067ENSG00000231092ENST00000417481ENSG00000233581ENST00000452736CIL_0000AN_0003ENSMUSG00000039354ENSMUST00000047615ENSMUST00000126832ENSMUST00000133123ENSMUST00000136498ENSMUST00000145868ENSMUST00000150725ENSMUST00000152225ENSMUST00000152814ENSMUST00000156797ENSMUSG00000039372ENSMUST00000047786ENSMUSG00000085812ENSMUST00000146593
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000AN_0001ENSDARG00000036895ENSDART00000053568ENSDARG00000056439ENSDART00000078939ENSDARG00000079146ENSDART00000038508ENSDART00000112984ENSDART00000122786ENSDART00000127514CIL_0000AN_0002ENSG00000144583ENST00000273067ENSG00000231092ENST00000417481ENSG00000233581ENST00000452736CIL_0000AN_0003ENSMUSG00000039354ENSMUST00000047615ENSMUST00000126832ENSMUST00000136498ENSMUST00000150725ENSMUST00000152225ENSMUST00000152814ENSMUST00000156797ENSMUSG00000039372ENSMUST00000047786ENSMUSG00000085812ENSMUST00000146593
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000036895 ENSDART00000053568 N/A N/A N/A 5.803±0.00 N/A N/A 57.141±45.46 60.201±0.00 0.419±0.00 N/A 3.355±0.00 N/A N/A N/A
ENSDARG00000056439 ENSDART00000078939 N/A N/A N/A 14.213±8.82 N/A N/A 0.032±0.00 N/A 0.057±0.00 N/A 0.902±0.00 N/A N/A N/A
ENSDARG00000079146 ENSDART00000038508 N/A N/A N/A 0.220±0.00 N/A N/A 0.252±0.00 N/A 0.030±0.00 N/A 0.140±0.00 N/A N/A N/A
ENSDART00000112984 N/A N/A N/A 0.124±0.00 N/A N/A N/A N/A 0.050±0.00 N/A N/A N/A N/A N/A
ENSDART00000122786 N/A N/A N/A 0.278±0.00 N/A N/A N/A 1.177±0.00 0.054±0.00 N/A N/A N/A N/A N/A
ENSDART00000127514 N/A N/A N/A N/A N/A N/A 0.202±0.14 N/A 0.074±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000144583 ENST00000273067 0.009±0.00 N/A N/A 1.395±0.18 0.010±0.00 0.107±0.01 0.027±0.00 0.127±0.00 N/A 0.035±0.00 N/A 0.132±0.12 1.061±0.54 0.045±0.02
ENSG00000231092 ENST00000417481 0.019±0.00 0.399±0.00 N/A N/A 0.264±0.00 0.193±0.00 0.018±0.00 0.228±0.00 0.050±0.00 0.168±0.00 0.017±0.00 N/A N/A 0.053±0.00
ENSG00000233581 ENST00000452736 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.023±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000039354 ENSMUST00000047615 6.057±1.98 6.883±1.63 11.875±0.31 10.958±1.84 4.576±1.68 3.189±1.15 4.284±1.56 4.544±1.38 3.500±1.45 4.450±1.47 6.526±0.25 8.613±4.51 5.925±1.90 2.749±1.32
ENSMUST00000126832 N/A 14.096±2.60 N/A N/A 7.871±1.05 7.637±0.50 N/A N/A 4.209±0.00 10.560±0.53 N/A 16.675±2.77 N/A N/A
ENSMUST00000133123 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136498 N/A N/A N/A N/A N/A N/A N/A N/A 0.512±0.01 N/A N/A N/A N/A 1.608±0.37
ENSMUST00000145868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150725 1.212±0.37 1.105±0.00 N/A N/A 0.867±0.00 N/A N/A N/A N/A N/A N/A 1.641±0.24 N/A N/A
ENSMUST00000152225 N/A 3.237±0.98 N/A 6.092±0.00 N/A N/A N/A N/A N/A N/A N/A 6.220±2.21 3.089±0.17 2.843±0.00
ENSMUST00000152814 N/A N/A N/A N/A 1.410±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156797 N/A N/A N/A N/A 1.062±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000039372 ENSMUST00000047786 0.022±0.01 0.108±0.02 0.050±0.03 4.787±2.22 0.073±0.02 0.107±0.05 0.058±0.00 0.032±0.02 0.011±0.01 0.499±0.09 0.329±0.20 0.706±0.16 0.013±0.01 0.193±0.06
ENSMUSG00000085812 ENSMUST00000146593 0.211±0.00 N/A 0.485±0.40 0.328±0.13 0.182±0.06 N/A 0.094±0.00 0.102±0.00 0.245±0.30 0.134±0.00 0.089±0.00 0.316±0.23 N/A 0.109±0.00

Loading