C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039354 Smarcal1 10090 + 1:72583251-72633134 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047615 Smarcal1-001 72583251-72633134 protein_coding
  ENSMUST00000126832 Smarcal1-010 72616522-72628299 retained_intron
  ENSMUST00000133123 Smarcal1-008 72583251-72595831 protein_coding
  ENSMUST00000136498 Smarcal1-005 72583251-72626916 retained_intron
  ENSMUST00000145868 Smarcal1-007 72583251-72585991 protein_coding
  ENSMUST00000150725 Smarcal1-004 72585638-72626916 retained_intron
  ENSMUST00000152225 Smarcal1-006 72583615-72633134 protein_coding
  ENSMUST00000152814 Smarcal1-002 72583251-72596271 retained_intron
  ENSMUST00000156797 Smarcal1-003 72583251-72599399 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047615ENSMUST00000126832ENSMUST00000136498ENSMUST00000150725ENSMUST00000152225ENSMUST00000152814ENSMUST00000156797
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047615 6.057±1.98 6.883±1.63 11.875±0.31 10.958±1.84 4.576±1.68 3.189±1.15 4.284±1.56 4.544±1.38 3.500±1.45 4.450±1.47 6.526±0.25 8.613±4.51 5.925±1.90 2.749±1.32
ENSMUST00000126832 N/A 14.096±2.60 N/A N/A 7.871±1.05 7.637±0.50 N/A N/A 4.209±0.00 10.560±0.53 N/A 16.675±2.77 N/A N/A
ENSMUST00000136498 N/A N/A N/A N/A N/A N/A N/A N/A 0.512±0.01 N/A N/A N/A N/A 1.608±0.37
ENSMUST00000150725 1.212±0.37 1.105±0.00 N/A N/A 0.867±0.00 N/A N/A N/A N/A N/A N/A 1.641±0.24 N/A N/A
ENSMUST00000152225 N/A 3.237±0.98 N/A 6.092±0.00 N/A N/A N/A N/A N/A N/A N/A 6.220±2.21 3.089±0.17 2.843±0.00
ENSMUST00000152814 N/A N/A N/A N/A 1.410±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156797 N/A N/A N/A N/A 1.062±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000AN CIL_0000AN_0003 CGP 1:72427112-72633134

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000733 IEA DNA strand renaturation
GO:0003677 IEA DNA binding
GO:0004386 IEA helicase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0005662 ISS DNA replication factor A complex
GO:0006200 IDA:ISS ATP catabolic process
GO:0006259 ISS DNA metabolic process
GO:0006357 ISS regulation of transcription from RNA polymerase II promoter
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0008094 IDA:ISS DNA-dependent ATPase activity
GO:0016568 IEA chromatin modification
GO:0031297 ISS replication fork processing
GO:0035861 ISS site of double-strand break
GO:0036310 ISS annealing helicase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079146 smarcal1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 protein_coding Danio_rerio
ENSG00000138375 SMARCAL1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 protein_coding Homo_sapiens

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