Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info
Description:	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1
Gene Accession	Gene Name	Tax ID	Strand	Position	Gene Biotype
ENSG00000138375	SMARCAL1	9606	+	2:216412414-216483053	protein_coding
	Transcript Accession		Transcript Name	Position	Transcript Biotype
	ENST00000357276		SMARCAL1-001	216412414-216483053	protein_coding
	ENST00000358207		SMARCAL1-003	216412743-216483017	protein_coding
	ENST00000392128		SMARCAL1-002	216415113-216483017	protein_coding
	ENST00000412913		SMARCAL1-009	216415945-216428712	protein_coding
	ENST00000425815		SMARCAL1-005	216412561-216414762	protein_coding
	ENST00000427645		SMARCAL1-010	216415008-216428779	protein_coding
	ENST00000430374		SMARCAL1-004	216412414-216415141	protein_coding
	ENST00000434435		SMARCAL1-007	216412765-216414981	protein_coding
	ENST00000444508		SMARCAL1-006	216412510-216415095	protein_coding
	ENST00000445153		SMARCAL1-012	216428776-216447061	protein_coding
	ENST00000479008		SMARCAL1-011	216427055-216432772	processed_transcript
	ENST00000486983		SMARCAL1-013	216447122-216451601	retained_intron
	ENST00000496037		SMARCAL1-008	216412765-216414363	retained_intron

Expression Patterns

No expression data.

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_0000AN	CIL_0000AN_0002	CGP	2:216257865-216483053

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0000733	IMP	DNA strand renaturation
GO:0003677	IEA	DNA binding
GO:0004386	IEA	helicase activity
GO:0005515	IPI	protein binding
GO:0005524	IEA	ATP binding
GO:0005634	IEA:IDA	nucleus
GO:0005662	IDA	DNA replication factor A complex
GO:0006259	IMP	DNA metabolic process
GO:0006357	IMP	regulation of transcription from RNA polymerase II promoter
GO:0006974	IMP	cellular response to DNA damage stimulus
GO:0008094	IMP	DNA-dependent ATPase activity
GO:0008152	IEA	metabolic process
GO:0016568	IEA	chromatin modification
GO:0031297	IMP	replication fork processing
GO:0035861	IDA	site of double-strand break
GO:0036310	IMP	annealing helicase activity

Homologs
ENSEMBL Accession	Gene Name	Description	Biotype	Species
ENSDARG00000079146	smarcal1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1	protein_coding	Danio_rerio
ENSMUSG00000039354	Smarcal1	SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1	protein_coding	Mus_musculus

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