C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: eukaryotic translation initiation factor 3, subunit E, a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000090697 eif3ea 7955 - 16:41222004-41297137 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000126705 eif3ea-001 41222004-41294376 protein_coding
  ENSDART00000140684 eif3ea-003 41247934-41294299 nonsense_mediated_decay
  ENSDART00000141084 eif3ea-005 41243597-41249030 processed_transcript
  ENSDART00000144651 eif3ea-004 41243619-41274314 protein_coding
  ENSDART00000145794 eif3ea-002 41291724-41297137 processed_transcript

Danio rerio EnsemblZv9

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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000126705ENSDART00000140684
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000126705 22.960±22.79 172.895±24.67 239.320±0.00 87.043±0.00 92.542±0.00
ENSDART00000140684 3.677±0.16 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004T1 CIL_0004T1_0001 CGP 16:41119538-41297137
CIL_0004T2 CIL_0004T2_0001 CGP 16:41222004-41395350

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001731 IEA formation of translation preinitiation complex
GO:0003743 IEA translation initiation factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005852 IEA eukaryotic translation initiation factor 3 complex
GO:0006412 IEA translation
GO:0006413 ISS translational initiation
GO:0006446 IEA regulation of translational initiation
GO:0016282 IEA eukaryotic 43S preinitiation complex
GO:0033290 IEA eukaryotic 48S preinitiation complex
GO:0043010 IMP camera-type eye development
GO:0043473 IMP pigmentation
GO:0048703 IMP embryonic viscerocranium morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000104408 EIF3E eukaryotic translation initiation factor 3, subunit E protein_coding Homo_sapiens
ENSMUSG00000022336 Eif3e eukaryotic translation initiation factor 3, subunit E protein_coding Mus_musculus

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