C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004T2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000090697-ENSDARG00000003308 CGP 7955 16:41222004-41395350
GeneTranscriptPositionBiotype
ENSDARG00000003308 (emc2)
ER membrane protein complex subunit 2 		ENSDART00000023238 (emc2-001) 41325219-41395350 protein_coding
ENSDARG00000084310 (5S_rRNA)
5S ribosomal RNA 		ENSDART00000119710 (5S_rRNA.611-201) 41227695-41227812 rRNA
ENSDARG00000090697 (eif3ea)
eukaryotic translation initiation factor 3, subunit E, a 		ENSDART00000126705 (eif3ea-001) 41222004-41294376 protein_coding
ENSDART00000140684 (eif3ea-003) 41247934-41294299 nonsense_mediated_decay
ENSDART00000141084 (eif3ea-005) 41243597-41249030 processed_transcript
ENSDART00000144651 (eif3ea-004) 41243619-41274314 protein_coding
ENSDART00000145794 (eif3ea-002) 41291724-41297137 processed_transcript

Danio rerio Ensembl (Zv9)

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CIL_0004T2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000104408-ENSG00000104412 CGP 9606 8:108201216-108486918
GeneTranscriptPositionBiotype
ENSG00000104408 (EIF3E)
eukaryotic translation initiation factor 3, subunit E 		ENST00000220849 (EIF3E-001) 108201743-108248765 protein_coding
ENST00000518100 (EIF3E-006) 108235031-108248716 nonsense_mediated_decay
ENST00000518345 (EIF3E-007) 108235097-108248717 protein_coding
ENST00000518442 (EIF3E-003) 108234284-108248802 retained_intron
ENST00000518634 (EIF3E-017) 108241893-108355726 processed_transcript
ENST00000519030 (EIF3E-002) 108201780-108248698 protein_coding
ENST00000519413 (EIF3E-014) 108216476-108227932 processed_transcript
ENST00000519517 (EIF3E-012) 108203470-108231908 processed_transcript
ENST00000519627 (EIF3E-008) 108214607-108248719 protein_coding
ENST00000521297 (EIF3E-010) 108235094-108248668 protein_coding
ENST00000521440 (EIF3E-011) 108233394-108248698 protein_coding
ENST00000521614 (EIF3E-004) 108201865-108242833 retained_intron
ENST00000522088 (EIF3E-018) 108309022-108435333 processed_transcript
ENST00000522352 (EIF3E-015) 108201743-108229136 protein_coding
ENST00000522445 (EIF3E-009) 108217381-108248718 nonsense_mediated_decay
ENST00000522887 (EIF3E-005) 108235054-108248717 nonsense_mediated_decay
ENST00000523646 (EIF3E-013) 108228177-108229398 retained_intron
ENST00000523674 (EIF3E-016) 108201216-108203346 retained_intron
ENSG00000104412 (EMC2)
ER membrane protein complex subunit 2 		ENST00000220853 (EMC2-001) 108443624-108486912 protein_coding
ENST00000517593 (EMC2-004) 108443633-108456073 retained_intron
ENST00000517784 (EMC2-006) 108443637-108470962 processed_transcript
ENST00000519450 (EMC2-002) 108473851-108486918 retained_intron
ENST00000519642 (EMC2-007) 108450431-108486563 protein_coding
ENST00000520294 (EMC2-005) 108464047-108486636 processed_transcript
ENST00000524143 (EMC2-003) 108443601-108455902 protein_coding
ENSG00000243287 (RPS17P14)
ribosomal protein S17 pseudogene 14 		ENST00000382740 (RPS17P14-001) 108378831-108379545 processed_pseudogene
ENSG00000253754 (RP11-35G22.1)
 ENST00000520037 (RP11-35G22.1-001) 108226200-108227544 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0004T2_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022336-ENSMUSG00000022337 CGP 10090 15:43250040-43527777
GeneTranscriptPositionBiotype
ENSMUSG00000022336 (Eif3e)
eukaryotic translation initiation factor 3, subunit E 		ENSMUST00000022960 (Eif3e-201) 43250040-43282736 protein_coding
ENSMUSG00000022337 (Emc2)
ER membrane protein complex subunit 2 		ENSMUST00000022962 (Emc2-201) 43477229-43527777 protein_coding
ENSMUSG00000072592 (Gm10373)
predicted gene 10373 		ENSMUST00000100683 (Gm10373-001) 43430943-43477036 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004T2_0001ENSDARG00000003308ENSDART00000023238ENSDARG00000084310ENSDART00000119710ENSDARG00000090697ENSDART00000126705ENSDART00000140684ENSDART00000141084ENSDART00000144651ENSDART00000145794CIL_0004T2_0002ENSG00000104408ENST00000220849ENST00000518100ENST00000518345ENST00000518442ENST00000518634ENST00000519030ENST00000519413ENST00000519517ENST00000519627ENST00000521297ENST00000521440ENST00000521614ENST00000522088ENST00000522352ENST00000522445ENST00000522887ENST00000523646ENST00000523674ENSG00000104412ENST00000220853ENST00000517593ENST00000517784ENST00000519450ENST00000519642ENST00000520294ENST00000524143ENSG00000243287ENST00000382740ENSG00000253754ENST00000520037CIL_0004T2_0003ENSMUSG00000022336ENSMUST00000022960ENSMUSG00000022337ENSMUST00000022962ENSMUSG00000072592ENSMUST00000100683
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004T2_0001ENSDARG00000003308ENSDART00000023238ENSDARG00000084310ENSDART00000119710ENSDARG00000090697ENSDART00000126705ENSDART00000140684CIL_0004T2_0002ENSG00000104408ENST00000220849ENST00000519030ENST00000519627ENST00000522445ENSG00000104412ENST00000220853ENST00000517784ENST00000519450ENST00000519642ENST00000520294ENSG00000243287ENST00000382740ENSG00000253754ENST00000520037CIL_0004T2_0003ENSMUSG00000022336ENSMUST00000022960ENSMUSG00000022337ENSMUST00000022962ENSMUSG00000072592ENSMUST00000100683
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000003308 ENSDART00000023238 N/A N/A N/A 32.573±15.89 N/A N/A 22.955±10.78 22.781±8.39 3.743±0.00 N/A 11.045±0.00 N/A N/A N/A
ENSDARG00000084310 ENSDART00000119710 N/A N/A N/A 14.351±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000090697 ENSDART00000126705 N/A N/A N/A 22.960±22.79 N/A N/A 172.895±24.67 239.320±0.00 87.043±0.00 N/A 92.542±0.00 N/A N/A N/A
ENSDART00000140684 N/A N/A N/A 3.677±0.16 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000141084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000144651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000145794 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104408 ENST00000220849 60.708±0.00 59.252±0.00 8.608±0.00 19.984±3.47 52.246±4.88 80.416±48.03 22.016±4.43 34.922±5.56 32.740±12.15 54.517±15.45 31.876±22.40 131.897±40.13 39.731±16.01 63.173±13.10
ENST00000518100 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518442 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519030 41.211±0.00 48.702±0.00 8.510±0.00 14.189±2.30 35.036±8.50 42.919±23.28 9.962±4.31 17.868±0.07 17.593±3.76 29.787±17.51 13.291±2.21 79.243±64.59 28.823±10.40 40.156±0.00
ENST00000519413 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519627 N/A N/A N/A N/A N/A N/A 18.081±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000521297 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521614 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522088 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 57.548±0.00 37.333±0.00 32.437±0.00
ENST00000522887 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523646 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000104412 ENST00000220853 10.737±0.00 11.186±0.00 2.934±0.00 18.788±3.75 7.300±4.34 10.046±6.30 3.451±0.67 8.249±6.01 5.339±0.40 8.861±3.27 8.761±3.22 16.902±5.98 8.501±2.11 24.463±0.48
ENST00000517593 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517784 N/A N/A N/A 8.201±0.00 10.295±0.00 4.170±0.00 2.596±0.00 12.649±0.00 N/A N/A N/A 5.168±0.00 N/A N/A
ENST00000519450 N/A N/A 1.292±0.00 N/A 1.667±0.00 1.491±0.00 0.923±0.00 N/A 2.074±0.00 2.259±0.00 0.589±0.00 2.497±0.00 N/A N/A
ENST00000519642 9.013±0.00 N/A N/A 34.227±0.00 12.059±0.00 14.441±0.00 N/A N/A N/A 10.298±0.00 N/A N/A N/A 26.133±0.00
ENST00000520294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.291±0.00 6.086±0.00 42.394±0.00
ENST00000524143 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000243287 ENST00000382740 0.037±0.00 N/A N/A N/A N/A N/A 0.182±0.00 N/A N/A N/A N/A N/A N/A 0.068±0.03
ENSG00000253754 ENST00000520037 N/A 0.129±0.00 N/A 0.159±0.00 N/A 0.048±0.00 0.100±0.00 N/A 0.022±0.00 0.167±0.00 0.023±0.00 0.266±0.00 N/A 0.047±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022336 ENSMUST00000022960 28.818±4.51 8.671±0.76 69.007±4.36 47.995±11.51 22.172±2.89 11.925±1.65 17.653±1.17 17.339±2.49 35.248±28.67 19.176±3.27 59.361±6.40 31.147±37.18 74.007±36.67 32.875±12.88
ENSMUSG00000022337 ENSMUST00000022962 17.856±5.48 3.776±0.72 35.454±2.52 21.877±5.41 11.609±4.19 4.724±1.08 29.014±2.83 12.804±2.34 14.646±8.03 8.253±2.09 38.741±1.69 8.359±9.99 25.757±4.67 11.035±0.63
ENSMUSG00000072592 ENSMUST00000100683 N/A N/A N/A 0.035±0.02 N/A N/A N/A N/A N/A N/A N/A N/A 0.019±0.00 0.080±0.00

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