C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004T1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000079570-ENSDARG00000090697 CGP 7955 16:41119538-41297137
GeneTranscriptPositionBiotype
ENSDARG00000079570 (rspo2)
R-spondin 2 		ENSDART00000109124 (rspo2-201) 41119538-41218889 protein_coding
ENSDART00000131899 (rspo2-001) 41120594-41183438 protein_coding
ENSDARG00000084310 (5S_rRNA)
5S ribosomal RNA 		ENSDART00000119710 (5S_rRNA.611-201) 41227695-41227812 rRNA
ENSDARG00000090697 (eif3ea)
eukaryotic translation initiation factor 3, subunit E, a 		ENSDART00000126705 (eif3ea-001) 41222004-41294376 protein_coding
ENSDART00000140684 (eif3ea-003) 41247934-41294299 nonsense_mediated_decay
ENSDART00000141084 (eif3ea-005) 41243597-41249030 processed_transcript
ENSDART00000144651 (eif3ea-004) 41243619-41274314 protein_coding
ENSDART00000145794 (eif3ea-002) 41291724-41297137 processed_transcript

Danio rerio Ensembl (Zv9)

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CIL_0004T1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000147655-ENSG00000104408 CGP 9606 8:107899316-108435333
GeneTranscriptPositionBiotype
ENSG00000104408 (EIF3E)
eukaryotic translation initiation factor 3, subunit E 		ENST00000220849 (EIF3E-001) 108201743-108248765 protein_coding
ENST00000518100 (EIF3E-006) 108235031-108248716 nonsense_mediated_decay
ENST00000518345 (EIF3E-007) 108235097-108248717 protein_coding
ENST00000518442 (EIF3E-003) 108234284-108248802 retained_intron
ENST00000518634 (EIF3E-017) 108241893-108355726 processed_transcript
ENST00000519030 (EIF3E-002) 108201780-108248698 protein_coding
ENST00000519413 (EIF3E-014) 108216476-108227932 processed_transcript
ENST00000519517 (EIF3E-012) 108203470-108231908 processed_transcript
ENST00000519627 (EIF3E-008) 108214607-108248719 protein_coding
ENST00000521297 (EIF3E-010) 108235094-108248668 protein_coding
ENST00000521440 (EIF3E-011) 108233394-108248698 protein_coding
ENST00000521614 (EIF3E-004) 108201865-108242833 retained_intron
ENST00000522088 (EIF3E-018) 108309022-108435333 processed_transcript
ENST00000522352 (EIF3E-015) 108201743-108229136 protein_coding
ENST00000522445 (EIF3E-009) 108217381-108248718 nonsense_mediated_decay
ENST00000522887 (EIF3E-005) 108235054-108248717 nonsense_mediated_decay
ENST00000523646 (EIF3E-013) 108228177-108229398 retained_intron
ENST00000523674 (EIF3E-016) 108201216-108203346 retained_intron
ENSG00000147655 (RSPO2)
R-spondin 2 		ENST00000276659 (RSPO2-001) 107899317-108083648 protein_coding
ENST00000517781 (RSPO2-002) 107899316-108083203 protein_coding
ENST00000517939 (RSPO2-003) 107899316-108081956 protein_coding
ENST00000520026 (RSPO2-006) 107960748-107997254 protein_coding
ENST00000521502 (RSPO2-008) 107901102-108073089 protein_coding
ENST00000521757 (RSPO2-007) 107958228-107989555 protein_coding
ENST00000521956 (RSPO2-005) 107960737-108082836 protein_coding
ENST00000522333 (RSPO2-004) 107989109-108083642 protein_coding
ENSG00000230948 (AP001331.1)
 ENST00000413008 (AP001331.1-001) 108131100-108132114 processed_pseudogene
ENSG00000243287 (RPS17P14)
ribosomal protein S17 pseudogene 14 		ENST00000382740 (RPS17P14-001) 108378831-108379545 processed_pseudogene
ENSG00000253228 (NRBF2P4)
nuclear receptor binding factor 2 pseudogene 4 		ENST00000520874 (NRBF2P4-001) 107983116-107983965 processed_pseudogene
ENSG00000253754 (RP11-35G22.1)
 ENST00000520037 (RP11-35G22.1-001) 108226200-108227544 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0004T1_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000051920-ENSMUSG00000022336 CGP 10090 15:43020811-43282736
GeneTranscriptPositionBiotype
ENSMUSG00000022336 (Eif3e)
eukaryotic translation initiation factor 3, subunit E 		ENSMUST00000022960 (Eif3e-201) 43250040-43282736 protein_coding
ENSMUSG00000051920 (Rspo2)
R-spondin 2 homolog (Xenopus laevis) 		ENSMUST00000063492 (Rspo2-201) 43020811-43170818 protein_coding
ENSMUSG00000087905 (Gm22037)
predicted gene, 22037 		ENSMUST00000157280 (Gm22037-201) 43224625-43224920 misc_RNA
ENSMUSG00000098002 (Gm9658)
predicted gene 9658 		ENSMUST00000182757 (Gm9658-001) 43217150-43218161 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004T1_0001ENSDARG00000079570ENSDART00000109124ENSDART00000131899ENSDARG00000084310ENSDART00000119710ENSDARG00000090697ENSDART00000126705ENSDART00000140684ENSDART00000141084ENSDART00000144651ENSDART00000145794CIL_0004T1_0002ENSG00000104408ENST00000220849ENST00000518100ENST00000518345ENST00000518442ENST00000518634ENST00000519030ENST00000519413ENST00000519517ENST00000519627ENST00000521297ENST00000521440ENST00000521614ENST00000522088ENST00000522352ENST00000522445ENST00000522887ENST00000523646ENST00000523674ENSG00000147655ENST00000276659ENST00000517781ENST00000517939ENST00000520026ENST00000521502ENST00000521757ENST00000521956ENST00000522333ENSG00000230948ENST00000413008ENSG00000243287ENST00000382740ENSG00000253228ENST00000520874ENSG00000253754ENST00000520037CIL_0004T1_0003ENSMUSG00000022336ENSMUST00000022960ENSMUSG00000051920ENSMUST00000063492ENSMUSG00000087905ENSMUST00000157280ENSMUSG00000098002ENSMUST00000182757
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004T1_0001ENSDARG00000079570ENSDART00000109124ENSDART00000131899ENSDARG00000084310ENSDART00000119710ENSDARG00000090697ENSDART00000126705ENSDART00000140684CIL_0004T1_0002ENSG00000104408ENST00000220849ENST00000519030ENST00000519627ENST00000522445ENSG00000147655ENST00000276659ENST00000517781ENST00000517939ENST00000521502ENST00000521956ENST00000522333ENSG00000230948ENST00000413008ENSG00000243287ENST00000382740ENSG00000253228ENST00000520874ENSG00000253754ENST00000520037CIL_0004T1_0003ENSMUSG00000022336ENSMUST00000022960ENSMUSG00000051920ENSMUST00000063492ENSMUSG00000087905ENSMUST00000157280ENSMUSG00000098002ENSMUST00000182757
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000079570 ENSDART00000109124 N/A N/A N/A 1.919±0.73 N/A N/A 0.125±0.03 0.162±0.14 N/A N/A 0.343±0.00 N/A N/A N/A
ENSDART00000131899 N/A N/A N/A N/A N/A N/A 0.103±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000084310 ENSDART00000119710 N/A N/A N/A 14.351±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000090697 ENSDART00000126705 N/A N/A N/A 22.960±22.79 N/A N/A 172.895±24.67 239.320±0.00 87.043±0.00 N/A 92.542±0.00 N/A N/A N/A
ENSDART00000140684 N/A N/A N/A 3.677±0.16 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000141084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000144651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000145794 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104408 ENST00000220849 60.708±0.00 59.252±0.00 8.608±0.00 19.984±3.47 52.246±4.88 80.416±48.03 22.016±4.43 34.922±5.56 32.740±12.15 54.517±15.45 31.876±22.40 131.897±40.13 39.731±16.01 63.173±13.10
ENST00000518100 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518442 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519030 41.211±0.00 48.702±0.00 8.510±0.00 14.189±2.30 35.036±8.50 42.919±23.28 9.962±4.31 17.868±0.07 17.593±3.76 29.787±17.51 13.291±2.21 79.243±64.59 28.823±10.40 40.156±0.00
ENST00000519413 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519627 N/A N/A N/A N/A N/A N/A 18.081±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000521297 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521614 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522088 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 57.548±0.00 37.333±0.00 32.437±0.00
ENST00000522887 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523646 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000147655 ENST00000276659 N/A N/A N/A 5.528±1.99 0.155±0.00 N/A N/A N/A N/A 0.654±0.00 N/A 0.040±0.00 3.169±2.60 0.129±0.00
ENST00000517781 N/A N/A N/A N/A N/A 0.450±0.37 N/A 0.009±0.00 0.044±0.01 N/A 0.053±0.00 N/A 2.789±0.00 N/A
ENST00000517939 0.078±0.00 N/A N/A N/A N/A N/A 0.018±0.00 N/A 0.034±0.00 N/A 0.007±0.00 0.123±0.06 N/A 0.241±0.19
ENST00000520026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521502 N/A N/A N/A 7.011±0.00 0.019±0.00 0.356±0.00 0.028±0.00 N/A N/A 1.385±0.00 N/A N/A 12.293±0.00 0.603±0.00
ENST00000521757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521956 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.372±0.00 N/A N/A N/A N/A
ENST00000522333 N/A N/A N/A N/A N/A N/A N/A N/A 0.403±0.00 N/A N/A N/A N/A N/A
ENSG00000230948 ENST00000413008 N/A N/A N/A 0.083±0.00 N/A N/A N/A N/A 0.067±0.00 N/A N/A N/A 0.061±0.00 N/A
ENSG00000243287 ENST00000382740 0.037±0.00 N/A N/A N/A N/A N/A 0.182±0.00 N/A N/A N/A N/A N/A N/A 0.068±0.03
ENSG00000253228 ENST00000520874 N/A N/A N/A N/A N/A N/A N/A N/A 0.015±0.00 N/A N/A N/A N/A N/A
ENSG00000253754 ENST00000520037 N/A 0.129±0.00 N/A 0.159±0.00 N/A 0.048±0.00 0.100±0.00 N/A 0.022±0.00 0.167±0.00 0.023±0.00 0.266±0.00 N/A 0.047±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022336 ENSMUST00000022960 28.818±4.51 8.671±0.76 69.007±4.36 47.995±11.51 22.172±2.89 11.925±1.65 17.653±1.17 17.339±2.49 35.248±28.67 19.176±3.27 59.361±6.40 31.147±37.18 74.007±36.67 32.875±12.88
ENSMUSG00000051920 ENSMUST00000063492 0.033±0.01 N/A 0.019±0.01 2.368±1.80 0.170±0.05 0.082±0.03 0.030±0.00 0.011±0.00 0.030±0.02 0.148±0.02 0.024±0.01 1.066±0.42 0.020±0.01 0.049±0.03
ENSMUSG00000087905 ENSMUST00000157280 N/A N/A N/A 0.333±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000098002 ENSMUST00000182757 0.053±0.02 0.060±0.00 N/A 0.090±0.08 0.251±0.17 N/A N/A N/A 0.032±0.01 N/A 0.050±0.00 0.082±0.00 0.072±0.06 N/A

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