C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000001617 SEMA3F 9606 + 3:50155045-50189075 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000002829 SEMA3F-001 50155129-50189075 protein_coding
  ENST00000413852 SEMA3F-004 50155091-50189074 protein_coding
  ENST00000414301 SEMA3F-005 50155045-50182766 protein_coding
  ENST00000420831 SEMA3F-010 50173807-50176861 protein_coding
  ENST00000426511 SEMA3F-006 50155411-50173956 protein_coding
  ENST00000434342 SEMA3F-002 50159019-50189073 protein_coding
  ENST00000450338 SEMA3F-003 50155059-50183563 protein_coding
  ENST00000470737 SEMA3F-009 50184272-50185465 retained_intron
  ENST00000493743 SEMA3F-008 50182638-50183608 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeColonKidneyLungPlacentaENST00000002829ENST00000413852
Transcript ID Adipose Colon Kidney Lung Placenta
ENST00000002829 15.048±0.00 N/A 21.409±0.00 36.050±0.00 15.724±0.00
ENST00000413852 15.760±0.00 18.558±0.00 N/A 27.340±0.00 25.891±7.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003FJ CIL_0003FJ_0002 CGP 3:50155045-50196516

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001755 IEA neural crest cell migration
GO:0004872 IEA receptor activity
GO:0005515 IEA protein binding
GO:0005615 TAS extracellular space
GO:0007275 IEA multicellular organismal development
GO:0007411 IDA axon guidance
GO:0016020 IEA membrane
GO:0021612 IEA facial nerve structural organization
GO:0021637 IEA trigeminal nerve structural organization
GO:0021675 ISS nerve development
GO:0021785 IEA branchiomotor neuron axon guidance
GO:0036486 IEA ventral trunk neural crest cell migration
GO:0045499 IDA chemorepellent activity
GO:0048843 IEA negative regulation of axon extension involved in axon guidance
GO:0048846 ISS axon extension involved in axon guidance
GO:0050919 IEA negative chemotaxis
GO:0061549 ISS sympathetic ganglion development
GO:0097490 ISS sympathetic neuron projection extension
GO:0097491 ISS sympathetic neuron projection guidance
GO:1901166 IEA neural crest cell migration involved in autonomic nervous system development
GO:1902285 ISS semaphorin-plexin signaling pathway involved in neuron projection guidance
GO:1902287 IEA semaphorin-plexin signaling pathway involved in axon guidance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011163 sema3fa semaphorin 3fa protein_coding Danio_rerio
ENSDARG00000055373 sema3fb semaphorin 3fb protein_coding Danio_rerio
ENSMUSG00000034684 Sema3f sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F protein_coding Mus_musculus

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