C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003FJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000011163-ENSDARG00000044199 CGP 7955 6:42750747-42861712
GeneTranscriptPositionBiotype
ENSDARG00000011163 (sema3fa)
semaphorin 3fa 		ENSDART00000046498 (sema3fa-001) 42750747-42847184 protein_coding
ENSDART00000129191 (sema3fa-201) 42751679-42847181 protein_coding
ENSDARG00000044199 (gnat1)
guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1 		ENSDART00000064896 (gnat1-001) 42850343-42861712 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0003FJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000001617-ENSG00000114349 CGP 9606 3:50155045-50196516
GeneTranscriptPositionBiotype
ENSG00000001617 (SEMA3F)
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F 		ENST00000002829 (SEMA3F-001) 50155129-50189075 protein_coding
ENST00000413852 (SEMA3F-004) 50155091-50189074 protein_coding
ENST00000414301 (SEMA3F-005) 50155045-50182766 protein_coding
ENST00000420831 (SEMA3F-010) 50173807-50176861 protein_coding
ENST00000426511 (SEMA3F-006) 50155411-50173956 protein_coding
ENST00000434342 (SEMA3F-002) 50159019-50189073 protein_coding
ENST00000450338 (SEMA3F-003) 50155059-50183563 protein_coding
ENST00000470737 (SEMA3F-009) 50184272-50185465 retained_intron
ENST00000493743 (SEMA3F-008) 50182638-50183608 retained_intron
ENSG00000114349 (GNAT1)
guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1 		ENST00000232461 (GNAT1-001) 50191612-50196516 protein_coding
ENST00000433068 (GNAT1-002) 50191670-50196515 protein_coding
ENST00000440836 (GNAT1-003) 50192672-50193837 protein_coding
ENST00000467787 (GNAT1-004) 50192698-50193173 retained_intron
ENST00000481246 (GNAT1-005) 50193572-50194182 processed_transcript
ENSG00000207922 (MIR566)
microRNA 566 		ENST00000385187 (MIR566-201) 50173326-50173419 miRNA

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003FJ_0001ENSDARG00000011163ENSDART00000046498ENSDART00000129191ENSDARG00000044199ENSDART00000064896CIL_0003FJ_0002ENSG00000001617ENST00000002829ENST00000413852ENST00000414301ENST00000420831ENST00000426511ENST00000434342ENST00000450338ENST00000470737ENST00000493743ENSG00000114349ENST00000232461ENST00000433068ENST00000440836ENST00000467787ENST00000481246ENSG00000207922ENST00000385187
Region; Gene Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003FJ_0001ENSDARG00000011163ENSDART00000046498ENSDART00000129191ENSDARG00000044199ENSDART00000064896CIL_0003FJ_0002ENSG00000001617ENST00000002829ENST00000413852ENSG00000114349ENST00000232461ENST00000433068ENST00000440836ENST00000467787ENSG00000207922ENST00000385187
Gene Transcript Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000011163 ENSDART00000046498 N/A N/A 6.746±1.28 N/A N/A 0.116±0.00 0.359±0.00 N/A N/A 1.038±0.00 N/A N/A N/A
ENSDART00000129191 N/A N/A 2.000±0.92 N/A N/A 0.133±0.00 0.717±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000044199 ENSDART00000064896 N/A N/A 1.954±1.22 N/A N/A N/A 0.261±0.13 N/A N/A 0.033±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000001617 ENST00000002829 15.048±0.00 N/A N/A N/A N/A N/A 21.409±0.00 N/A 36.050±0.00 N/A N/A 15.724±0.00 N/A
ENST00000413852 15.760±0.00 N/A N/A N/A 18.558±0.00 N/A N/A N/A 27.340±0.00 N/A N/A 25.891±7.35 N/A
ENST00000414301 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000420831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000426511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434342 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470737 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493743 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000114349 ENST00000232461 N/A N/A N/A N/A N/A N/A N/A 0.082±0.00 N/A N/A 0.012±0.00 N/A N/A
ENST00000433068 N/A N/A 0.027±0.00 N/A N/A N/A 0.059±0.00 0.029±0.00 N/A N/A N/A N/A 0.247±0.00
ENST00000440836 N/A N/A N/A 0.072±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467787 N/A N/A N/A N/A N/A N/A 0.663±0.00 N/A N/A N/A N/A N/A N/A
ENST00000481246 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000207922 ENST00000385187 N/A 1.230±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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