C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cell division cycle 27
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000004897 CDC27 9606 - 17:47117703-47189422 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000066544 CDC27-001 47117703-47189266 protein_coding
  ENST00000525495 CDC27-003 47141844-47189261 retained_intron
  ENST00000526866 CDC27-006 47122552-47189264 nonsense_mediated_decay
  ENST00000527547 CDC27-005 47120880-47189224 protein_coding
  ENST00000528147 CDC27-010 47181282-47189252 retained_intron
  ENST00000528748 CDC27-009 47157060-47188936 processed_transcript
  ENST00000531206 CDC27-002 47120255-47189176 protein_coding
  ENST00000532575 CDC27-008 47157230-47189422 processed_transcript
  ENST00000532893 CDC27-011 47157055-47189261 nonsense_mediated_decay
  ENST00000533415 CDC27-004 47120771-47189251 nonsense_mediated_decay
  ENST00000570740 CDC27-016 47120610-47123895 nonsense_mediated_decay
  ENST00000570818 CDC27-017 47154755-47172047 nonsense_mediated_decay
  ENST00000571643 CDC27-014 47120810-47137244 protein_coding
  ENST00000573502 CDC27-015 47137152-47142381 nonsense_mediated_decay
  ENST00000573550 CDC27-013 47154698-47181605 nonsense_mediated_decay
  ENST00000574304 CDC27-018 47142428-47169977 nonsense_mediated_decay
  ENST00000575483 CDC27-012 47156913-47189252 protein_coding
  ENST00000575830 CDC27-020 47143883-47156715 processed_transcript
  ENST00000576484 CDC27-019 47151814-47157267 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000066544ENST00000527547ENST00000531206
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000066544 3.819±0.00 5.121±0.00 0.288±0.00 3.853±2.41 3.244±2.09 0.917±0.00 0.909±0.47 0.914±0.00 5.125±0.00 1.702±0.06 0.617±0.00 2.502±1.07 4.716±0.76 5.712±2.97
ENST00000527547 N/A N/A 0.473±0.00 3.159±0.00 2.221±0.00 1.867±0.00 1.117±0.00 1.941±0.00 N/A 2.321±0.00 N/A 2.442±0.00 N/A N/A
ENST00000531206 N/A N/A 0.684±0.00 1.440±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HD CIL_0008HD_0001 VISTA 17:46991162-47592148
CIL_0002QR CIL_0002QR_0001 CGP 17:47117703-47223679

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005680 IDA anaphase-promoting complex
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0005819 TAS spindle
GO:0005829 TAS cytosol
GO:0005876 IDA spindle microtubule
GO:0007091 IMP metaphase/anaphase transition of mitotic cell cycle
GO:0007094 TAS mitotic spindle assembly checkpoint
GO:0008283 TAS cell proliferation
GO:0019903 IPI protein phosphatase binding
GO:0031145 TAS anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0051301 IEA cell division
GO:0051436 TAS negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051437 TAS positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051439 TAS regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0070979 IDA protein K11-linked ubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056258 cdc27 cell division cycle 27 protein_coding Danio_rerio
ENSMUSG00000020687 Cdc27 cell division cycle 27 protein_coding Mus_musculus

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