C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cell division cycle 27
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000066544 CDC27-001 ENSG00000004897 9606 - 17:47117703-47189266 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000066544
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000066544 3.819±0.00 5.121±0.00 0.288±0.00 3.853±2.41 3.244±2.09 0.917±0.00 0.909±0.47 0.914±0.00 5.125±0.00 1.702±0.06 0.617±0.00 2.502±1.07 4.716±0.76 5.712±2.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HD CIL_0008HD_0001 VISTA 17:46991162-47592148
CIL_0002QR CIL_0002QR_0001 CGP 17:47117703-47223679

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005680 IDA anaphase-promoting complex
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0005819 TAS spindle
GO:0005829 TAS cytosol
GO:0005876 IDA spindle microtubule
GO:0007091 IMP metaphase/anaphase transition of mitotic cell cycle
GO:0007094 TAS mitotic spindle assembly checkpoint
GO:0008283 TAS cell proliferation
GO:0019903 IPI protein phosphatase binding
GO:0031145 TAS anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0051436 TAS negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051437 TAS positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051439 TAS regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0070979 IDA protein K11-linked ubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000093923 Cdc27-001 protein_coding Mus_musculus 0 4621
ENSMUST00000106962 Cdc27-002 protein_coding Mus_musculus 0 4217
ENSMUST00000106961 Cdc27-003 protein_coding Mus_musculus 0 1768
ENSMUST00000135303 Cdc27-004 processed_transcript Mus_musculus 0 520
ENSMUST00000127506 Cdc27-005 processed_transcript Mus_musculus 0 473

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