C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002QR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000004897-ENSG00000198336 CGP 9606 17:47117703-47223679
GeneTranscriptPositionBiotype
ENSG00000004897 (CDC27)
cell division cycle 27 		ENST00000066544 (CDC27-001) 47117703-47189266 protein_coding
ENST00000525495 (CDC27-003) 47141844-47189261 retained_intron
ENST00000526866 (CDC27-006) 47122552-47189264 nonsense_mediated_decay
ENST00000527547 (CDC27-005) 47120880-47189224 protein_coding
ENST00000528147 (CDC27-010) 47181282-47189252 retained_intron
ENST00000528748 (CDC27-009) 47157060-47188936 processed_transcript
ENST00000531206 (CDC27-002) 47120255-47189176 protein_coding
ENST00000532575 (CDC27-008) 47157230-47189422 processed_transcript
ENST00000532893 (CDC27-011) 47157055-47189261 nonsense_mediated_decay
ENST00000533415 (CDC27-004) 47120771-47189251 nonsense_mediated_decay
ENST00000570740 (CDC27-016) 47120610-47123895 nonsense_mediated_decay
ENST00000570818 (CDC27-017) 47154755-47172047 nonsense_mediated_decay
ENST00000571643 (CDC27-014) 47120810-47137244 protein_coding
ENST00000573502 (CDC27-015) 47137152-47142381 nonsense_mediated_decay
ENST00000573550 (CDC27-013) 47154698-47181605 nonsense_mediated_decay
ENST00000574304 (CDC27-018) 47142428-47169977 nonsense_mediated_decay
ENST00000575483 (CDC27-012) 47156913-47189252 protein_coding
ENST00000575830 (CDC27-020) 47143883-47156715 processed_transcript
ENST00000576484 (CDC27-019) 47151814-47157267 nonsense_mediated_decay
ENSG00000198336 (MYL4)
myosin, light chain 4, alkali; atrial, embryonic 		ENST00000354968 (MYL4-201) 47209062-47223678 protein_coding
ENST00000393450 (MYL4-001) 47209348-47223679 protein_coding
ENST00000536623 (MYL4-004) 47209066-47223038 protein_coding
ENST00000570671 (MYL4-006) 47220030-47223477 protein_coding
ENST00000570772 (MYL4-008) 47209063-47221851 nonsense_mediated_decay
ENST00000571981 (MYL4-007) 47200446-47223672 nonsense_mediated_decay
ENST00000572303 (MYL4-005) 47209400-47221796 protein_coding
ENST00000572316 (MYL4-002) 47209035-47223658 protein_coding
ENST00000573747 (MYL4-009) 47209342-47223057 nonsense_mediated_decay
ENST00000576874 (MYL4-003) 47209066-47222409 protein_coding
ENSG00000239291 (RP5-867C24.1)
 ENST00000488906 (RP5-867C24.1-001) 47159191-47159993 processed_pseudogene
ENSG00000262265 (RP5-867C24.4)
 ENST00000574021 (RP5-867C24.4-001) 47161075-47162064 sense_intronic
CIL_0002QR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020687-ENSMUSG00000061086 CGP 10090 11:104502745-104595753
GeneTranscriptPositionBiotype
ENSMUSG00000020687 (Cdc27)
cell division cycle 27 		ENSMUST00000093923 (Cdc27-001) 104502745-104550483 protein_coding
ENSMUST00000106961 (Cdc27-003) 104520254-104550478 protein_coding
ENSMUST00000106962 (Cdc27-002) 104504937-104550392 protein_coding
ENSMUST00000127506 (Cdc27-005) 104508347-104513276 processed_transcript
ENSMUST00000135303 (Cdc27-004) 104531737-104550620 processed_transcript
ENSMUSG00000061086 (Myl4)
myosin, light polypeptide 4 		ENSMUST00000018800 (Myl4-001) 104550663-104587215 protein_coding
ENSMUST00000106956 (Myl4-004) 104577281-104587215 protein_coding
ENSMUST00000106957 (Myl4-003) 104576985-104587215 protein_coding
ENSMUST00000123074 (Myl4-006) 104580325-104587209 retained_intron
ENSMUST00000130588 (Myl4-005) 104577017-104585014 nonsense_mediated_decay
ENSMUST00000136244 (Myl4-008) 104584964-104595753 protein_coding
ENSMUST00000153761 (Myl4-007) 104575446-104585748 protein_coding
ENSMUST00000155271 (Myl4-002) 104582039-104586347 retained_intron
ENSMUSG00000081588 (Gm11661)
predicted gene 11661 		ENSMUST00000121761 (Gm11661-001) 104565400-104566726 transcribed_processed_pseudogene
ENSMUSG00000082706 (Gm11663)
predicted gene 11663 		ENSMUST00000117888 (Gm11663-001) 104571268-104571557 processed_pseudogene
ENSMUSG00000086222 (Gm11665)
predicted gene 11665 		ENSMUST00000148136 (Gm11665-001) 104556789-104557777 antisense
ENSMUSG00000086932 (Gm22000)
predicted gene 22000 		ENSMUST00000153087 (Gm22000-001) 104557922-104565661 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002QR_0001ENSG00000004897ENST00000066544ENST00000527547ENST00000531206ENSG00000198336ENST00000354968ENST00000393450ENST00000536623ENST00000570671ENST00000570772ENST00000572316ENST00000573747ENST00000576874ENSG00000239291ENST00000488906ENSG00000262265ENST00000574021CIL_0002QR_0002ENSMUSG00000020687ENSMUST00000093923ENSMUST00000106962ENSMUSG00000061086ENSMUST00000018800ENSMUST00000106956ENSMUST00000106957ENSMUST00000123074ENSMUST00000130588ENSMUST00000153761ENSMUST00000155271ENSMUSG00000081588ENSMUST00000121761ENSMUSG00000082706ENSMUST00000117888ENSMUSG00000086222ENSMUST00000148136ENSMUSG00000086932ENSMUST00000153087
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000004897 ENST00000066544 3.819±0.00 5.121±0.00 0.288±0.00 3.853±2.41 3.244±2.09 0.917±0.00 0.909±0.47 0.914±0.00 5.125±0.00 1.702±0.06 0.617±0.00 2.502±1.07 4.716±0.76 5.712±2.97
ENST00000525495 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527547 N/A N/A 0.473±0.00 3.159±0.00 2.221±0.00 1.867±0.00 1.117±0.00 1.941±0.00 N/A 2.321±0.00 N/A 2.442±0.00 N/A N/A
ENST00000528147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531206 N/A N/A 0.684±0.00 1.440±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532575 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532893 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533415 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570818 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571643 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573502 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574304 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575483 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576484 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000198336 ENST00000354968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.049±0.00
ENST00000393450 N/A 1.268±0.00 N/A N/A 0.714±0.00 0.683±0.00 58.960±50.28 N/A N/A N/A N/A N/A 2.799±2.49 1.148±0.00
ENST00000536623 0.267±0.00 N/A N/A N/A 0.672±0.00 N/A N/A N/A 0.285±0.00 N/A N/A 0.180±0.00 2.470±0.47 N/A
ENST00000570671 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.188±0.00 N/A N/A
ENST00000570772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.949±0.00
ENST00000571981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572316 0.863±0.00 0.686±0.00 N/A N/A N/A 0.670±0.00 N/A 0.316±0.00 N/A 5.815±0.00 1.408±0.00 N/A 4.121±0.00 2.742±0.00
ENST00000573747 N/A N/A N/A 0.121±0.00 0.754±0.00 0.266±0.00 75.366±0.00 N/A N/A 5.302±0.00 0.322±0.00 N/A 0.582±0.00 N/A
ENST00000576874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.449±0.00 2.354±0.00 2.106±0.00
ENSG00000239291 ENST00000488906 0.216±0.00 0.645±0.00 N/A 0.304±0.00 0.794±0.44 0.259±0.12 0.136±0.03 0.396±0.00 0.169±0.14 0.276±0.25 0.176±0.00 0.768±0.49 0.263±0.00 0.519±0.28
ENSG00000262265 ENST00000574021 0.077±0.00 0.333±0.00 N/A 0.144±0.04 0.191±0.00 N/A 0.639±0.00 0.049±0.00 0.157±0.00 N/A 0.259±0.00 0.281±0.18 0.391±0.00 0.434±0.32
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020687 ENSMUST00000093923 7.338±0.35 2.033±0.40 7.305±1.61 6.457±4.25 3.461±0.52 1.521±0.55 2.086±0.83 3.134±0.46 5.118±3.76 4.755±1.49 2.413±0.22 5.332±4.18 11.011±4.06 6.954±2.62
ENSMUST00000106961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000106962 2.741±0.42 N/A N/A N/A 2.086±0.51 2.109±0.51 0.791±0.07 0.915±0.25 N/A 1.537±0.00 N/A 3.203±0.79 5.251±1.66 8.266±1.78
ENSMUST00000127506 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000061086 ENSMUST00000018800 N/A N/A N/A N/A 0.274±0.00 N/A N/A 0.263±0.00 0.122±0.00 N/A N/A 2.116±0.98 N/A 17.395±5.85
ENSMUST00000106956 3.307±0.28 N/A 34.372±0.26 0.773±0.09 1.047±0.52 1.687±0.35 573.537±82.89 0.379±0.00 2.098±2.69 79.419±5.52 6.534±1.27 1.162±0.13 34.853±45.14 N/A
ENSMUST00000106957 3.342±0.95 N/A N/A N/A 0.830±0.51 0.217±0.00 N/A 0.287±0.00 0.652±0.35 N/A 2.212±0.71 N/A 26.370±21.00 N/A
ENSMUST00000123074 5.257±3.36 0.444±0.33 8.292±0.00 5.357±6.84 1.085±0.43 0.659±0.15 N/A 0.692±0.38 0.713±0.92 22.156±0.00 N/A 4.633±1.46 13.357±6.21 7.907±1.34
ENSMUST00000130588 N/A 0.285±0.04 N/A N/A 0.285±0.00 N/A N/A N/A N/A N/A N/A 1.094±0.00 N/A N/A
ENSMUST00000136244 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153761 N/A 0.378±0.10 N/A 19.801±0.00 0.604±0.19 0.732±0.02 N/A 0.435±0.16 0.236±0.12 N/A N/A 2.480±1.62 29.455±8.88 25.600±0.00
ENSMUST00000155271 0.519±0.04 0.107±0.05 1.558±0.00 0.098±0.02 0.266±0.08 0.107±0.03 11.167±0.00 0.067±0.03 0.056±0.03 N/A N/A 0.390±0.12 1.478±0.92 N/A
ENSMUSG00000081588 ENSMUST00000121761 N/A N/A N/A N/A N/A N/A N/A N/A 0.063±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000082706 ENSMUST00000117888 0.263±0.00 N/A N/A N/A N/A 0.311±0.01 N/A N/A 0.065±0.01 N/A N/A 0.650±0.33 0.428±0.00 0.242±0.00
ENSMUSG00000086222 ENSMUST00000148136 0.324±0.00 N/A 0.395±0.11 N/A 0.604±0.26 0.572±0.00 0.826±0.45 N/A N/A N/A 0.920±0.27 0.578±0.30 0.985±0.73 N/A
ENSMUSG00000086932 ENSMUST00000153087 N/A 0.431±0.31 N/A N/A 0.563±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

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