C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002QR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000004897-ENSG00000198336 CGP 9606 17:47117703-47223679
GeneTranscriptPositionBiotype
ENSG00000004897 (CDC27)
cell division cycle 27 		ENST00000066544 (CDC27-001) 47117703-47189266 protein_coding
ENST00000525495 (CDC27-003) 47141844-47189261 retained_intron
ENST00000526866 (CDC27-006) 47122552-47189264 nonsense_mediated_decay
ENST00000527547 (CDC27-005) 47120880-47189224 protein_coding
ENST00000528147 (CDC27-010) 47181282-47189252 retained_intron
ENST00000528748 (CDC27-009) 47157060-47188936 processed_transcript
ENST00000531206 (CDC27-002) 47120255-47189176 protein_coding
ENST00000532575 (CDC27-008) 47157230-47189422 processed_transcript
ENST00000532893 (CDC27-011) 47157055-47189261 nonsense_mediated_decay
ENST00000533415 (CDC27-004) 47120771-47189251 nonsense_mediated_decay
ENST00000570740 (CDC27-016) 47120610-47123895 nonsense_mediated_decay
ENST00000570818 (CDC27-017) 47154755-47172047 nonsense_mediated_decay
ENST00000571643 (CDC27-014) 47120810-47137244 protein_coding
ENST00000573502 (CDC27-015) 47137152-47142381 nonsense_mediated_decay
ENST00000573550 (CDC27-013) 47154698-47181605 nonsense_mediated_decay
ENST00000574304 (CDC27-018) 47142428-47169977 nonsense_mediated_decay
ENST00000575483 (CDC27-012) 47156913-47189252 protein_coding
ENST00000575830 (CDC27-020) 47143883-47156715 processed_transcript
ENST00000576484 (CDC27-019) 47151814-47157267 nonsense_mediated_decay
ENSG00000198336 (MYL4)
myosin, light chain 4, alkali; atrial, embryonic 		ENST00000354968 (MYL4-201) 47209062-47223678 protein_coding
ENST00000393450 (MYL4-001) 47209348-47223679 protein_coding
ENST00000536623 (MYL4-004) 47209066-47223038 protein_coding
ENST00000570671 (MYL4-006) 47220030-47223477 protein_coding
ENST00000570772 (MYL4-008) 47209063-47221851 nonsense_mediated_decay
ENST00000571981 (MYL4-007) 47200446-47223672 nonsense_mediated_decay
ENST00000572303 (MYL4-005) 47209400-47221796 protein_coding
ENST00000572316 (MYL4-002) 47209035-47223658 protein_coding
ENST00000573747 (MYL4-009) 47209342-47223057 nonsense_mediated_decay
ENST00000576874 (MYL4-003) 47209066-47222409 protein_coding
ENSG00000239291 (RP5-867C24.1)
 ENST00000488906 (RP5-867C24.1-001) 47159191-47159993 processed_pseudogene
ENSG00000262265 (RP5-867C24.4)
 ENST00000574021 (RP5-867C24.4-001) 47161075-47162064 sense_intronic

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0002QR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020687-ENSMUSG00000061086 CGP 10090 11:104502745-104595753
GeneTranscriptPositionBiotype
ENSMUSG00000020687 (Cdc27)
cell division cycle 27 		ENSMUST00000093923 (Cdc27-001) 104502745-104550483 protein_coding
ENSMUST00000106961 (Cdc27-003) 104520254-104550478 protein_coding
ENSMUST00000106962 (Cdc27-002) 104504937-104550392 protein_coding
ENSMUST00000127506 (Cdc27-005) 104508347-104513276 processed_transcript
ENSMUST00000135303 (Cdc27-004) 104531737-104550620 processed_transcript
ENSMUSG00000061086 (Myl4)
myosin, light polypeptide 4 		ENSMUST00000018800 (Myl4-001) 104550663-104587215 protein_coding
ENSMUST00000106956 (Myl4-004) 104577281-104587215 protein_coding
ENSMUST00000106957 (Myl4-003) 104576985-104587215 protein_coding
ENSMUST00000123074 (Myl4-006) 104580325-104587209 retained_intron
ENSMUST00000130588 (Myl4-005) 104577017-104585014 nonsense_mediated_decay
ENSMUST00000136244 (Myl4-008) 104584964-104595753 protein_coding
ENSMUST00000153761 (Myl4-007) 104575446-104585748 protein_coding
ENSMUST00000155271 (Myl4-002) 104582039-104586347 retained_intron
ENSMUSG00000081588 (Gm11661)
predicted gene 11661 		ENSMUST00000121761 (Gm11661-001) 104565400-104566726 transcribed_processed_pseudogene
ENSMUSG00000082706 (Gm11663)
predicted gene 11663 		ENSMUST00000117888 (Gm11663-001) 104571268-104571557 processed_pseudogene
ENSMUSG00000086222 (Gm11665)
predicted gene 11665 		ENSMUST00000148136 (Gm11665-001) 104556789-104557777 antisense
ENSMUSG00000086932 (Gm22000)
predicted gene 22000 		ENSMUST00000153087 (Gm22000-001) 104557922-104565661 processed_transcript

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002QR_0001ENSG00000004897ENST00000066544ENST00000527547ENST00000531206ENSG00000198336ENST00000354968ENST00000393450ENST00000536623ENST00000570671ENST00000570772ENST00000572316ENST00000573747ENST00000576874ENSG00000239291ENST00000488906ENSG00000262265ENST00000574021CIL_0002QR_0002ENSMUSG00000020687ENSMUST00000093923ENSMUST00000106962ENSMUSG00000061086ENSMUST00000018800ENSMUST00000106956ENSMUST00000106957ENSMUST00000123074ENSMUST00000130588ENSMUST00000153761ENSMUST00000155271ENSMUSG00000081588ENSMUST00000121761ENSMUSG00000082706ENSMUST00000117888ENSMUSG00000086222ENSMUST00000148136ENSMUSG00000086932ENSMUST00000153087
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000004897 ENST00000066544 3.819±0.00 5.121±0.00 0.288±0.00 3.853±2.41 3.244±2.09 0.917±0.00 0.909±0.47 0.914±0.00 5.125±0.00 1.702±0.06 0.617±0.00 2.502±1.07 4.716±0.76 5.712±2.97
ENST00000525495 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527547 N/A N/A 0.473±0.00 3.159±0.00 2.221±0.00 1.867±0.00 1.117±0.00 1.941±0.00 N/A 2.321±0.00 N/A 2.442±0.00 N/A N/A
ENST00000528147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531206 N/A N/A 0.684±0.00 1.440±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532575 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532893 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533415 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570818 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571643 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573502 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574304 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575483 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576484 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000198336 ENST00000354968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.049±0.00
ENST00000393450 N/A 1.268±0.00 N/A N/A 0.714±0.00 0.683±0.00 58.960±50.28 N/A N/A N/A N/A N/A 2.799±2.49 1.148±0.00
ENST00000536623 0.267±0.00 N/A N/A N/A 0.672±0.00 N/A N/A N/A 0.285±0.00 N/A N/A 0.180±0.00 2.470±0.47 N/A
ENST00000570671 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.188±0.00 N/A N/A
ENST00000570772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.949±0.00
ENST00000571981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572316 0.863±0.00 0.686±0.00 N/A N/A N/A 0.670±0.00 N/A 0.316±0.00 N/A 5.815±0.00 1.408±0.00 N/A 4.121±0.00 2.742±0.00
ENST00000573747 N/A N/A N/A 0.121±0.00 0.754±0.00 0.266±0.00 75.366±0.00 N/A N/A 5.302±0.00 0.322±0.00 N/A 0.582±0.00 N/A
ENST00000576874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.449±0.00 2.354±0.00 2.106±0.00
ENSG00000239291 ENST00000488906 0.216±0.00 0.645±0.00 N/A 0.304±0.00 0.794±0.44 0.259±0.12 0.136±0.03 0.396±0.00 0.169±0.14 0.276±0.25 0.176±0.00 0.768±0.49 0.263±0.00 0.519±0.28
ENSG00000262265 ENST00000574021 0.077±0.00 0.333±0.00 N/A 0.144±0.04 0.191±0.00 N/A 0.639±0.00 0.049±0.00 0.157±0.00 N/A 0.259±0.00 0.281±0.18 0.391±0.00 0.434±0.32
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020687 ENSMUST00000093923 7.338±0.35 2.033±0.40 7.305±1.61 6.457±4.25 3.461±0.52 1.521±0.55 2.086±0.83 3.134±0.46 5.118±3.76 4.755±1.49 2.413±0.22 5.332±4.18 11.011±4.06 6.954±2.62
ENSMUST00000106961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000106962 2.741±0.42 N/A N/A N/A 2.086±0.51 2.109±0.51 0.791±0.07 0.915±0.25 N/A 1.537±0.00 N/A 3.203±0.79 5.251±1.66 8.266±1.78
ENSMUST00000127506 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000061086 ENSMUST00000018800 N/A N/A N/A N/A 0.274±0.00 N/A N/A 0.263±0.00 0.122±0.00 N/A N/A 2.116±0.98 N/A 17.395±5.85
ENSMUST00000106956 3.307±0.28 N/A 34.372±0.26 0.773±0.09 1.047±0.52 1.687±0.35 573.537±82.89 0.379±0.00 2.098±2.69 79.419±5.52 6.534±1.27 1.162±0.13 34.853±45.14 N/A
ENSMUST00000106957 3.342±0.95 N/A N/A N/A 0.830±0.51 0.217±0.00 N/A 0.287±0.00 0.652±0.35 N/A 2.212±0.71 N/A 26.370±21.00 N/A
ENSMUST00000123074 5.257±3.36 0.444±0.33 8.292±0.00 5.357±6.84 1.085±0.43 0.659±0.15 N/A 0.692±0.38 0.713±0.92 22.156±0.00 N/A 4.633±1.46 13.357±6.21 7.907±1.34
ENSMUST00000130588 N/A 0.285±0.04 N/A N/A 0.285±0.00 N/A N/A N/A N/A N/A N/A 1.094±0.00 N/A N/A
ENSMUST00000136244 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153761 N/A 0.378±0.10 N/A 19.801±0.00 0.604±0.19 0.732±0.02 N/A 0.435±0.16 0.236±0.12 N/A N/A 2.480±1.62 29.455±8.88 25.600±0.00
ENSMUST00000155271 0.519±0.04 0.107±0.05 1.558±0.00 0.098±0.02 0.266±0.08 0.107±0.03 11.167±0.00 0.067±0.03 0.056±0.03 N/A N/A 0.390±0.12 1.478±0.92 N/A
ENSMUSG00000081588 ENSMUST00000121761 N/A N/A N/A N/A N/A N/A N/A N/A 0.063±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000082706 ENSMUST00000117888 0.263±0.00 N/A N/A N/A N/A 0.311±0.01 N/A N/A 0.065±0.01 N/A N/A 0.650±0.33 0.428±0.00 0.242±0.00
ENSMUSG00000086222 ENSMUST00000148136 0.324±0.00 N/A 0.395±0.11 N/A 0.604±0.26 0.572±0.00 0.826±0.45 N/A N/A N/A 0.920±0.27 0.578±0.30 0.985±0.73 N/A
ENSMUSG00000086932 ENSMUST00000153087 N/A 0.431±0.31 N/A N/A 0.563±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Loading