C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: mesenchyme homeobox 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000005102 MEOX1 9606 - 17:43640388-43661954 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000318579 MEOX1-001 43640388-43661954 protein_coding
  ENST00000329168 MEOX1-201 43640402-43661563 protein_coding
  ENST00000393661 MEOX1-003 43641380-43661922 protein_coding
  ENST00000549132 MEOX1-002 43641379-43661563 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000318579ENST00000329168ENST00000393661ENST00000549132
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000318579 0.694±0.00 2.135±0.00 N/A 1.665±1.53 N/A 0.532±0.07 0.520±0.00 0.101±0.00 0.868±0.00 0.300±0.00 0.256±0.00 1.299±0.00
ENST00000329168 N/A 3.395±0.00 N/A 1.420±1.20 2.144±0.00 N/A 0.311±0.00 0.510±0.00 0.358±0.00 0.657±0.00 0.051±0.00 1.974±0.00
ENST00000393661 N/A N/A 0.116±0.00 N/A N/A N/A N/A N/A 1.488±0.00 0.331±0.00 0.139±0.00 N/A
ENST00000549132 N/A N/A N/A N/A N/A N/A 0.019±0.00 0.230±0.00 1.794±0.00 N/A 0.134±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000996 CIL_000996_0001 VISTA 17:43262867-43863532
CIL_00090X CIL_00090X_0001 VISTA 17:43291368-43892559
CIL_000997 CIL_000997_0001 VISTA 17:43327654-43928719
CIL_00048L CIL_00048L_0001 CGP 17:43527844-43661954
CIL_00059O CIL_00059O_0001 CGP 17:43640388-43758788

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001046 ISS core promoter sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001757 IEA somite specification
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0007275 TAS multicellular organismal development
GO:0008150 ND biological_process
GO:0043565 ISS sequence-specific DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0060218 ISS hematopoietic stem cell differentiation
GO:0061053 ISS somite development
GO:0061056 ISS sclerotome development
GO:0071837 IEA HMG box domain binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007891 meox1 mesenchyme homeobox 1 protein_coding Danio_rerio
ENSDARG00000040911 MEOX2 protein_coding Danio_rerio
ENSDARG00000061818 meox2b mesenchyme homeobox 2b protein_coding Danio_rerio
ENSMUSG00000001493 Meox1 mesenchyme homeobox 1 protein_coding Mus_musculus

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