C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mesenchyme homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000318579 MEOX1-001 ENSG00000005102 9606 - 17:43640388-43661954 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartLiverLungMuscleOvaryPlacentaTestisENST00000318579
Transcript ID Adipose Adrenal Breast Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000318579 0.694±0.00 2.135±0.00 1.665±1.53 0.532±0.07 0.520±0.00 0.101±0.00 0.868±0.00 0.300±0.00 0.256±0.00 1.299±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000996 CIL_000996_0001 VISTA 17:43262867-43863532
CIL_00090X CIL_00090X_0001 VISTA 17:43291368-43892559
CIL_000997 CIL_000997_0001 VISTA 17:43327654-43928719
CIL_00048L CIL_00048L_0001 CGP 17:43527844-43661954
CIL_00059O CIL_00059O_0001 CGP 17:43640388-43758788

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001046 ISS core promoter sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001757 IEA somite specification
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0007275 TAS multicellular organismal development
GO:0008150 ND biological_process
GO:0043565 ISS sequence-specific DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0060218 ISS hematopoietic stem cell differentiation
GO:0061053 ISS somite development
GO:0061056 ISS sclerotome development
GO:0071837 IEA HMG box domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057054 Meox1-001 protein_coding Mus_musculus 0 780

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