C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GC-rich sequence DNA-binding factor 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000005436 GCFC2 9606 - 2:75652000-75710989 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000321027 GCFC2-001 75662706-75710989 protein_coding
  ENST00000409857 GCFC2-004 75664419-75710892 protein_coding
  ENST00000427862 GCFC2-008 75664634-75687892 protein_coding
  ENST00000442309 GCFC2-007 75696252-75710941 protein_coding
  ENST00000470197 GCFC2-006 75662706-75701372 retained_intron
  ENST00000470285 GCFC2-002 75652000-75665941 nonsense_mediated_decay
  ENST00000470503 GCFC2-003 75701796-75710899 protein_coding
  ENST00000472230 GCFC2-005 75664645-75710606 nonsense_mediated_decay
  ENST00000486016 GCFC2-009 75690488-75694479 retained_intron
  ENST00000492826 GCFC2-010 75664418-75670214 protein_coding
  ENST00000541687 GCFC2-201 75662708-75710985 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000321027ENST00000409857ENST00000470197ENST00000470503ENST00000472230ENST00000541687
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000321027 1.431±0.00 N/A 1.644±0.71 N/A 1.856±0.00 1.455±0.54 N/A N/A 0.958±0.00 2.097±0.70 N/A N/A
ENST00000409857 1.945±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470197 N/A N/A N/A N/A 1.012±0.00 N/A N/A 1.633±0.00 N/A N/A N/A N/A
ENST00000470503 N/A N/A N/A N/A N/A N/A N/A 3.340±0.00 N/A N/A N/A N/A
ENST00000472230 N/A N/A N/A N/A N/A N/A 2.575±0.00 N/A N/A 5.995±0.00 2.955±1.44 7.944±0.00
ENST00000541687 N/A 2.000±0.00 N/A 2.253±0.00 N/A N/A N/A N/A N/A N/A N/A 2.825±0.80

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000245 IMP spliceosomal complex assembly
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA:IEA nucleus
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 NAS:IEA regulation of transcription, DNA-templated
GO:0045892 NAS negative regulation of transcription, DNA-templated
GO:0071008 IDA U2-type post-mRNA release spliceosomal complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079020 gcfc2 GC-rich sequence DNA-binding factor 2 protein_coding Danio_rerio
ENSMUSG00000035125 Gcfc2 GC-rich sequence DNA binding factor 2 protein_coding Mus_musculus

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