C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GC-rich sequence DNA binding factor 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035125 Gcfc2 10090 + 6:81923669-81959915 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000043195 Gcfc2-001 81923669-81959915 protein_coding
  ENSMUST00000127949 Gcfc2-004 81941354-81943724 retained_intron
  ENSMUST00000129678 Gcfc2-005 81949682-81956953 retained_intron
  ENSMUST00000132301 Gcfc2-003 81923680-81944219 retained_intron
  ENSMUST00000147673 Gcfc2-006 81932869-81934296 retained_intron
  ENSMUST00000152996 Gcfc2-002 81923673-81959256 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastOvaryPlacentaTestisENSMUST00000043195ENSMUST00000132301ENSMUST00000152996
Transcript ID Bladder Breast Ovary Placenta Testis
ENSMUST00000043195 N/A N/A 1.398±0.00 N/A 0.526±0.00
ENSMUST00000132301 N/A 1.471±0.00 3.344±1.03 N/A N/A
ENSMUST00000152996 1.346±0.00 N/A 2.085±0.43 1.067±0.00 0.725±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000245 ISS spliceosomal complex assembly
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001078 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 ISS nucleus
GO:0005730 ISS nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0071008 ISS U2-type post-mRNA release spliceosomal complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079020 gcfc2 GC-rich sequence DNA-binding factor 2 protein_coding Danio_rerio
ENSG00000005436 GCFC2 GC-rich sequence DNA-binding factor 2 protein_coding Homo_sapiens

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