C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GC-rich sequence DNA-binding factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000321027 GCFC2-001 ENSG00000005436 9606 - 2:75662706-75710989 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartMuscleOvaryENST00000321027
Transcript ID Adipose Brain Colon Heart Muscle Ovary
ENST00000321027 1.431±0.00 1.644±0.71 1.856±0.00 1.455±0.54 0.958±0.00 2.097±0.70

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000245 IMP spliceosomal complex assembly
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003677 IEA DNA binding
GO:0005634 IDA:IEA nucleus
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 NAS:IEA regulation of transcription, DNA-templated
GO:0045892 NAS negative regulation of transcription, DNA-templated
GO:0071008 IDA U2-type post-mRNA release spliceosomal complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043195 Gcfc2-001 protein_coding Mus_musculus 0 1685
ENSMUST00000132301 Gcfc2-003 retained_intron Mus_musculus 0 671
ENSMUST00000152996 Gcfc2-002 nonsense_mediated_decay Mus_musculus 0 331

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