C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ets variant 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000006468 ETV1 9606 - 7:13891228-13991425 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000242066 ETV1-201 13891233-13991425 protein_coding
  ENST00000399357 ETV1-202 13891233-13986514 protein_coding
  ENST00000403527 ETV1-008 13894155-13986514 protein_coding
  ENST00000403685 ETV1-003 13895858-13991249 protein_coding
  ENST00000405192 ETV1-005 13893030-13989676 protein_coding
  ENST00000405218 ETV1-004 13894381-13989947 protein_coding
  ENST00000405358 ETV1-007 13893268-13988873 protein_coding
  ENST00000420159 ETV1-203 13891233-13986514 protein_coding
  ENST00000421381 ETV1-011 13935893-13991425 protein_coding
  ENST00000430479 ETV1-001 13891228-13989946 protein_coding
  ENST00000431887 ETV1-012 13939196-13991384 protein_coding
  ENST00000433547 ETV1-014 13988159-13989666 protein_coding
  ENST00000438956 ETV1-009 13906501-13986452 protein_coding
  ENST00000443137 ETV1-002 13895736-13990690 nonsense_mediated_decay
  ENST00000443608 ETV1-020 13911282-13986441 protein_coding
  ENST00000460438 ETV1-019 13958757-13989103 retained_intron
  ENST00000472931 ETV1-010 13906198-13985489 retained_intron
  ENST00000476355 ETV1-016 13935711-13988513 retained_intron
  ENST00000476720 ETV1-022 13911247-13985520 processed_transcript
  ENST00000483075 ETV1-018 13974864-13989639 processed_transcript
  ENST00000485475 ETV1-013 13989308-13990489 processed_transcript
  ENST00000493831 ETV1-021 13900373-13906498 retained_intron
  ENST00000497115 ETV1-017 13931642-13987025 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000242066ENST00000399357ENST00000403527ENST00000403685ENST00000405192ENST00000405218ENST00000405358ENST00000420159ENST00000421381ENST00000430479ENST00000438956ENST00000472931ENST00000476720ENST00000497115
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000242066 N/A N/A N/A N/A 0.115±0.00 N/A N/A 0.069±0.00 N/A N/A N/A N/A N/A N/A
ENST00000399357 N/A N/A N/A N/A N/A N/A N/A 0.031±0.00 N/A N/A N/A N/A N/A N/A
ENST00000403527 N/A N/A N/A N/A N/A 0.645±0.00 N/A N/A N/A N/A N/A N/A N/A 0.783±0.00
ENST00000403685 N/A N/A N/A N/A N/A N/A N/A 0.238±0.00 N/A N/A N/A 0.357±0.00 N/A N/A
ENST00000405192 N/A 0.312±0.00 0.308±0.00 1.508±0.60 0.198±0.00 0.536±0.00 1.577±0.34 0.062±0.03 0.570±0.01 1.969±0.14 N/A 0.143±0.03 0.249±0.02 1.549±0.91
ENST00000405218 N/A N/A N/A N/A N/A N/A N/A 0.199±0.00 N/A N/A 0.060±0.00 N/A 0.187±0.03 N/A
ENST00000405358 0.718±0.00 0.425±0.00 N/A 1.180±0.00 0.958±0.00 0.974±0.63 2.416±0.00 0.208±0.00 N/A 3.705±0.63 0.130±0.00 0.329±0.14 0.420±0.05 1.520±0.84
ENST00000420159 N/A N/A N/A N/A N/A N/A N/A 0.027±0.00 N/A N/A N/A N/A N/A N/A
ENST00000421381 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.786±0.00 N/A N/A
ENST00000430479 0.154±0.00 0.143±0.00 N/A 1.783±0.00 N/A N/A 0.691±0.29 N/A N/A 1.355±0.00 N/A N/A 0.164±0.00 0.652±0.00
ENST00000438956 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.995±0.00 N/A N/A
ENST00000472931 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.745±0.00 N/A N/A N/A
ENST00000476720 N/A N/A N/A N/A N/A N/A 4.734±0.00 0.669±0.00 2.559±0.00 N/A N/A N/A N/A N/A
ENST00000497115 N/A N/A 1.817±0.00 18.576±0.00 N/A 1.447±0.00 N/A N/A 2.854±0.00 N/A N/A 1.841±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L8 CIL_0007L8_0001 UCNEbase 7:13411500-14389806

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003700 TAS:IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IBA:IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007411 IEA axon guidance
GO:0007517 IEA muscle organ development
GO:0007638 IEA mechanosensory behavior
GO:0030154 IBA cell differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048935 TAS peripheral nervous system neuron development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055183 etv1 ets variant gene 1 protein_coding Danio_rerio
ENSMUSG00000004151 Etv1 ets variant 1 protein_coding Mus_musculus

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