C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ets variant 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000405192 ETV1-005 ENSG00000006468 9606 - 7:13893030-13989676 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000405192
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000405192 0.312±0.00 0.308±0.00 1.508±0.60 0.198±0.00 0.536±0.00 1.577±0.34 0.062±0.03 0.570±0.01 1.969±0.14 0.143±0.03 0.249±0.02 1.549±0.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L8 CIL_0007L8_0001 UCNEbase 7:13411500-14389806

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003700 IEA:TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA:IBA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0030154 IBA cell differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048935 TAS peripheral nervous system neuron development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000160244 Etv1-004 protein_coding Mus_musculus 0 2543
ENSMUST00000159334 Etv1-002 protein_coding Mus_musculus 0 2298
ENSMUST00000162730 Etv1-008 retained_intron Mus_musculus 0 2298
ENSMUST00000095767 Etv1-001 protein_coding Mus_musculus 0 2298
ENSMUST00000162563 Etv1-003 protein_coding Mus_musculus 0 1393
ENSMUST00000052030 Gm5454-201 processed_pseudogene Mus_musculus 0 1157
ENSMUST00000161980 Etv1-006 protein_coding Mus_musculus 0 1070
ENSMUST00000161513 Etv1-010 protein_coding Mus_musculus 0 904
ENSMUST00000160701 Etv1-007 protein_coding Mus_musculus 0 894
ENSMUST00000160856 Etv1-005 protein_coding Mus_musculus 0 876
ENSMUST00000160996 Etv1-012 protein_coding Mus_musculus 0 785
ENSMUST00000161591 Etv1-013 processed_transcript Mus_musculus 0 697
ENSMUST00000163063 Etv1-011 protein_coding Mus_musculus 0 409
ENSMUST00000161164 Etv1-009 protein_coding Mus_musculus 0 233

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