C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ets variant 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000403527 ETV1-008 ENSG00000006468 9606 - 7:13894155-13986514 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonTestisENST00000403527
Transcript ID Colon Testis
ENST00000403527 0.645±0.00 0.783±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L8 CIL_0007L8_0001 UCNEbase 7:13411500-14389806

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003700 TAS:IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IBA:IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0030154 IBA cell differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048935 TAS peripheral nervous system neuron development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000159334 Etv1-002 protein_coding Mus_musculus 0 3788
ENSMUST00000162730 Etv1-008 retained_intron Mus_musculus 0 3389
ENSMUST00000095767 Etv1-001 protein_coding Mus_musculus 0 3389
ENSMUST00000161980 Etv1-006 protein_coding Mus_musculus 0 2063
ENSMUST00000162563 Etv1-003 protein_coding Mus_musculus 0 1868
ENSMUST00000160856 Etv1-005 protein_coding Mus_musculus 0 1770
ENSMUST00000052030 Gm5454-201 processed_pseudogene Mus_musculus 0 1749
ENSMUST00000160701 Etv1-007 protein_coding Mus_musculus 0 1410
ENSMUST00000160244 Etv1-004 protein_coding Mus_musculus 0 1160
ENSMUST00000161591 Etv1-013 processed_transcript Mus_musculus 0 819
ENSMUST00000160996 Etv1-012 protein_coding Mus_musculus 0 785
ENSMUST00000161513 Etv1-010 protein_coding Mus_musculus 0 689
ENSMUST00000163063 Etv1-011 protein_coding Mus_musculus 0 409

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