C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GTF2I repeat domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000006704 GTF2IRD1 9606 + 7:74453790-74602604 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265755 GTF2IRD1-001 74453790-74602590 protein_coding
  ENST00000424337 GTF2IRD1-005 74454109-74602601 protein_coding
  ENST00000455841 GTF2IRD1-002 74453970-74602604 protein_coding
  ENST00000470715 GTF2IRD1-006 74545762-74601106 protein_coding
  ENST00000476977 GTF2IRD1-003 74505992-74602591 protein_coding
  ENST00000486086 GTF2IRD1-007 74600960-74602583 retained_intron
  ENST00000489094 GTF2IRD1-004 74508075-74559660 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265755ENST00000424337ENST00000455841ENST00000470715ENST00000476977ENST00000486086ENST00000489094
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265755 0.957±0.00 N/A N/A 0.751±0.00 0.931±0.00 1.215±0.19 0.125±0.00 N/A 0.410±0.00 N/A 5.185±2.99 2.561±1.13 0.953±0.65 1.302±0.00
ENST00000424337 0.736±0.00 1.826±0.00 1.469±0.00 2.851±0.00 2.073±1.52 2.622±0.00 2.381±0.00 1.286±0.82 0.264±0.00 4.295±0.00 34.412±0.00 4.143±2.29 3.062±0.99 1.973±0.61
ENST00000455841 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.098±0.00
ENST00000470715 1.425±0.00 N/A N/A N/A N/A 5.411±0.00 N/A 7.411±0.00 0.601±0.00 4.887±0.00 31.357±0.00 N/A N/A 3.050±0.00
ENST00000476977 N/A N/A N/A N/A 0.274±0.00 0.076±0.00 N/A N/A N/A N/A N/A 1.235±0.00 0.158±0.00 N/A
ENST00000486086 N/A N/A N/A 1.609±0.00 3.156±0.00 N/A N/A N/A 0.666±0.00 N/A N/A N/A N/A N/A
ENST00000489094 N/A N/A N/A N/A N/A N/A N/A 0.351±0.00 0.838±0.00 0.259±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00007F CIL_00007F_0002 CGP 7:74289475-74602604

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0003705 NAS RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0006357 NAS regulation of transcription from RNA polymerase II promoter
GO:0006366 NAS transcription from RNA polymerase II promoter
GO:0007275 IEA multicellular organismal development
GO:0014886 IEA transition between slow and fast fiber

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022203 gtf2ird1 GTF2I repeat domain-containing 1 protein_coding Danio_rerio
ENSMUSG00000023079 Gtf2ird1 general transcription factor II I repeat domain-containing 1 protein_coding Mus_musculus

Loading