C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: prominin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000007062 PROM1 9606 - 4:15963076-16084378 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000447510 PROM1-201 15968226-16076118 protein_coding
  ENST00000502501 PROM1-008 16076059-16083658 processed_transcript
  ENST00000502943 PROM1-007 16018301-16038014 processed_transcript
  ENST00000503884 PROM1-019 15963076-15984303 nonsense_mediated_decay
  ENST00000504842 PROM1-013 16075975-16080700 processed_transcript
  ENST00000505450 PROM1-001 15968228-16084378 protein_coding
  ENST00000508167 PROM1-003 15968230-16083732 protein_coding
  ENST00000508322 PROM1-010 16075734-16083465 protein_coding
  ENST00000508940 PROM1-009 16075786-16083465 protein_coding
  ENST00000510224 PROM1-004 15968234-16083701 protein_coding
  ENST00000511153 PROM1-005 16003267-16075778 nonsense_mediated_decay
  ENST00000511270 PROM1-017 15985511-15986037 processed_transcript
  ENST00000512304 PROM1-012 16076566-16080700 processed_transcript
  ENST00000513108 PROM1-014 16075999-16080688 processed_transcript
  ENST00000513448 PROM1-002 15968230-15971945 retained_intron
  ENST00000513946 PROM1-018 15969092-15985790 protein_coding
  ENST00000514693 PROM1-015 16076441-16080677 processed_transcript
  ENST00000514967 PROM1-011 16075864-16082608 protein_coding
  ENST00000539194 PROM1-202 15968226-16076118 protein_coding
  ENST00000540805 PROM1-203 15968226-16076118 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000447510ENST00000502943ENST00000505450ENST00000508167ENST00000513448ENST00000539194ENST00000540805
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000447510 N/A N/A N/A N/A N/A 0.214±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000502943 N/A N/A N/A N/A N/A N/A 0.994±0.00 N/A N/A 0.100±0.00 9.080±0.00 8.091±0.00 6.465±0.00
ENST00000505450 0.082±0.00 3.627±0.00 0.314±0.00 2.164±0.00 9.315±0.00 0.355±0.00 N/A 0.267±0.00 1.030±0.00 N/A 2.055±1.74 1.733±0.00 N/A
ENST00000508167 N/A N/A N/A 3.416±0.00 1.333±0.00 N/A 9.757±0.00 0.445±0.04 1.990±0.00 N/A 2.652±2.32 8.096±2.51 1.403±0.00
ENST00000513448 N/A N/A N/A 2.225±0.00 N/A N/A N/A N/A N/A 0.127±0.06 1.183±0.00 N/A N/A
ENST00000539194 N/A N/A 0.255±0.03 1.085±0.00 N/A N/A N/A N/A 0.793±0.00 N/A N/A N/A N/A
ENST00000540805 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.494±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033X CIL_00033X_0003 CGP 4:15935569-15969309
CIL_0003U0 CIL_0003U0_0002 CGP 4:15960243-16084378
CIL_00033V CIL_00033V_0003 CGP 4:15963076-16227410

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001750 ISS photoreceptor outer segment
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005783 IDA endoplasmic reticulum
GO:0005793 IDA endoplasmic reticulum-Golgi intermediate compartment
GO:0005886 IDA plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0005902 IEA microvillus
GO:0005903 IEA brush border
GO:0009986 IDA cell surface
GO:0010842 ISS retina layer formation
GO:0016021 IEA integral component of membrane
GO:0016324 IEA apical plasma membrane
GO:0031982 IDA vesicle
GO:0032420 IEA stereocilium
GO:0042622 IDA photoreceptor outer segment membrane
GO:0042805 IDA actinin binding
GO:0042995 IEA cell projection
GO:0045296 IPI cadherin binding
GO:0045494 IMP photoreceptor cell maintenance
GO:0060042 IMP retina morphogenesis in camera-type eye
GO:0060219 ISS camera-type eye photoreceptor cell differentiation
GO:0070062 IDA extracellular vesicular exosome
GO:0072112 IMP glomerular visceral epithelial cell differentiation
GO:0072139 IMP glomerular parietal epithelial cell differentiation
GO:2000768 IMP positive regulation of nephron tubule epithelial cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034007 prom1b prominin 1 b protein_coding Danio_rerio
ENSDARG00000039966 prom1a prominin 1a protein_coding Danio_rerio
ENSMUSG00000029086 Prom1 prominin 1 protein_coding Mus_musculus

Loading