C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: prominin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000508167 PROM1-003 ENSG00000007062 9606 - 4:15968230-16083732 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonKidneyLiverLungOvaryPlacentaTestisENST00000508167
Transcript ID Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000508167 3.416±0.00 1.333±0.00 9.757±0.00 0.445±0.04 1.990±0.00 2.652±2.32 8.096±2.51 1.403±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033X CIL_00033X_0003 CGP 4:15935569-15969309
CIL_0003U0 CIL_0003U0_0002 CGP 4:15960243-16084378
CIL_00033V CIL_00033V_0003 CGP 4:15963076-16227410

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001750 ISS photoreceptor outer segment
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005783 IDA endoplasmic reticulum
GO:0005793 IDA endoplasmic reticulum-Golgi intermediate compartment
GO:0005886 IDA plasma membrane
GO:0009986 IDA cell surface
GO:0010842 ISS retina layer formation
GO:0016021 IEA integral component of membrane
GO:0031982 IDA vesicle
GO:0042622 IDA photoreceptor outer segment membrane
GO:0042805 IDA actinin binding
GO:0045296 IPI cadherin binding
GO:0045494 IMP photoreceptor cell maintenance
GO:0060042 IMP retina morphogenesis in camera-type eye
GO:0060219 ISS camera-type eye photoreceptor cell differentiation
GO:0070062 IDA extracellular vesicular exosome
GO:0072112 IMP glomerular visceral epithelial cell differentiation
GO:0072139 IMP glomerular parietal epithelial cell differentiation
GO:2000768 IMP positive regulation of nephron tubule epithelial cell differentiation

Homologs

No Homologs available.

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