C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SEC62 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000008952 SEC62 9606 + 3:169966635-169998373 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000337002 SEC62-001 169966765-169998373 protein_coding
  ENST00000460513 SEC62-004 169966801-169983253 nonsense_mediated_decay
  ENST00000461933 SEC62-011 169966635-169968523 processed_transcript
  ENST00000469515 SEC62-005 169966815-169988359 nonsense_mediated_decay
  ENST00000469890 SEC62-009 169982869-169983939 retained_intron
  ENST00000470355 SEC62-010 169985129-169992721 processed_transcript
  ENST00000480708 SEC62-002 169966808-169993831 protein_coding
  ENST00000481435 SEC62-007 169966826-169985885 retained_intron
  ENST00000487736 SEC62-008 169966814-169982857 nonsense_mediated_decay
  ENST00000497277 SEC62-012 169975451-169982859 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000337002ENST00000480708
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000337002 14.984±0.00 12.223±0.00 3.133±0.00 17.094±10.21 12.684±8.93 11.433±7.26 4.096±2.22 11.382±5.25 7.726±2.13 9.611±4.07 5.919±0.00 9.247±3.69 7.133±4.46 11.140±3.42
ENST00000480708 60.791±0.00 57.317±0.00 3.135±0.00 47.538±44.34 37.703±33.54 89.391±0.00 19.846±0.00 27.937±21.46 17.778±8.86 23.559±19.63 16.657±0.00 27.119±12.79 31.331±29.73 46.518±6.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00049M CIL_00049M_0002 CGP 3:169911572-169998373
CIL_0002XU CIL_0002XU_0001 CGP 3:169966635-170085403

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004872 TAS receptor activity
GO:0005524 IEA ATP binding
GO:0005783 TAS endoplasmic reticulum
GO:0005791 ISS rough endoplasmic reticulum
GO:0006613 TAS cotranslational protein targeting to membrane
GO:0006620 IMP posttranslational protein targeting to membrane
GO:0006810 IEA transport
GO:0008565 IEA protein transporter activity
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0042626 IEA ATPase activity, coupled to transmembrane movement of substances
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019951 sec62 SEC62 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000027706 Sec62 SEC62 homolog (S. cerevisiae) protein_coding Mus_musculus

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