C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00049M_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000060354-ENSDARG00000019951 CGP 7955 2:36947844-36986736
GeneTranscriptPositionBiotype
ENSDARG00000019951 (sec62)
SEC62 homolog (S. cerevisiae) 		ENSDART00000004626 (sec62-001) 36966215-36986736 protein_coding
ENSDART00000143311 (sec62-002) 36966270-36979074 retained_intron
ENSDARG00000060354 (samd7)
sterile alpha motif domain containing 7 		ENSDART00000084958 (samd7-201) 36947951-36963140 protein_coding
ENSDART00000126587 (samd7-001) 36947844-36963370 protein_coding

Danio rerio Ensembl (Zv9)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_00049M_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000187033-ENSG00000008952 CGP 9606 3:169911572-169998373
GeneTranscriptPositionBiotype
ENSG00000008952 (SEC62)
SEC62 homolog (S. cerevisiae) 		ENST00000337002 (SEC62-001) 169966765-169998373 protein_coding
ENST00000460513 (SEC62-004) 169966801-169983253 nonsense_mediated_decay
ENST00000461933 (SEC62-011) 169966635-169968523 processed_transcript
ENST00000469515 (SEC62-005) 169966815-169988359 nonsense_mediated_decay
ENST00000469890 (SEC62-009) 169982869-169983939 retained_intron
ENST00000470355 (SEC62-010) 169985129-169992721 processed_transcript
ENST00000480708 (SEC62-002) 169966808-169993831 protein_coding
ENST00000481435 (SEC62-007) 169966826-169985885 retained_intron
ENST00000487736 (SEC62-008) 169966814-169982857 nonsense_mediated_decay
ENST00000497277 (SEC62-012) 169975451-169982859 retained_intron
ENSG00000187033 (SAMD7)
sterile alpha motif domain containing 7 		ENST00000335556 (SAMD7-002) 169911572-169939175 protein_coding
ENST00000428432 (SAMD7-001) 169911572-169939175 protein_coding
ENST00000487910 (SAMD7-003) 169915411-169938587 nonsense_mediated_decay
ENSG00000240373 (SEC62-AS1)
SEC62 antisense RNA 1 		ENST00000479626 (SEC62-AS1-001) 169978536-169985715 antisense
ENSG00000244039 (RP11-379K17.2)
 ENST00000493762 (RP11-379K17.2-001) 169931998-169933229 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_00049M_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000051860-ENSMUSG00000027706 CGP 10090 3:30746293-30821263
GeneTranscriptPositionBiotype
ENSMUSG00000027706 (Sec62)
SEC62 homolog (S. cerevisiae) 		ENSMUST00000029256 (Sec62-201) 30792876-30821263 protein_coding
ENSMUSG00000051860 (Samd7)
sterile alpha motif domain containing 7 		ENSMUST00000108262 (Samd7-001) 30746340-30767174 protein_coding
ENSMUST00000172593 (Samd7-003) 30751045-30765495 nonsense_mediated_decay
ENSMUST00000174395 (Samd7-002) 30746293-30767166 nonsense_mediated_decay

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00049M_0001ENSDARG00000019951ENSDART00000004626ENSDART00000143311ENSDARG00000060354ENSDART00000084958ENSDART00000126587CIL_00049M_0002ENSG00000008952ENST00000337002ENST00000460513ENST00000461933ENST00000469515ENST00000469890ENST00000470355ENST00000480708ENST00000481435ENST00000487736ENST00000497277ENSG00000187033ENST00000335556ENST00000428432ENST00000487910ENSG00000240373ENST00000479626ENSG00000244039ENST00000493762CIL_00049M_0003ENSMUSG00000027706ENSMUST00000029256ENSMUSG00000051860ENSMUST00000108262ENSMUST00000172593ENSMUST00000174395
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00049M_0001ENSDARG00000019951ENSDART00000004626ENSDARG00000060354ENSDART00000084958ENSDART00000126587CIL_00049M_0002ENSG00000008952ENST00000337002ENST00000480708ENSG00000187033ENST00000335556ENST00000487910ENSG00000240373ENST00000479626ENSG00000244039ENST00000493762CIL_00049M_0003ENSMUSG00000027706ENSMUST00000029256ENSMUSG00000051860ENSMUST00000108262ENSMUST00000172593ENSMUST00000174395
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000019951 ENSDART00000004626 N/A N/A N/A 38.100±9.79 N/A N/A 10.846±6.45 18.128±4.03 5.594±0.00 N/A 6.760±0.00 N/A N/A N/A
ENSDART00000143311 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000060354 ENSDART00000084958 N/A N/A N/A 0.085±0.00 N/A N/A 0.124±0.00 0.488±0.00 0.044±0.00 N/A 0.029±0.00 N/A N/A N/A
ENSDART00000126587 N/A N/A N/A N/A N/A N/A 0.071±0.00 0.908±0.00 0.150±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000008952 ENST00000337002 14.984±0.00 12.223±0.00 3.133±0.00 17.094±10.21 12.684±8.93 11.433±7.26 4.096±2.22 11.382±5.25 7.726±2.13 9.611±4.07 5.919±0.00 9.247±3.69 7.133±4.46 11.140±3.42
ENST00000460513 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461933 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469515 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469890 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480708 60.791±0.00 57.317±0.00 3.135±0.00 47.538±44.34 37.703±33.54 89.391±0.00 19.846±0.00 27.937±21.46 17.778±8.86 23.559±19.63 16.657±0.00 27.119±12.79 31.331±29.73 46.518±6.84
ENST00000481435 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487736 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000187033 ENST00000335556 N/A 0.023±0.00 N/A N/A N/A N/A 0.026±0.00 N/A N/A N/A N/A 0.281±0.00 N/A 0.052±0.00
ENST00000428432 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.471±0.00 N/A 0.076±0.00
ENSG00000240373 ENST00000479626 0.180±0.00 1.105±0.00 1.816±0.00 N/A 0.453±0.17 1.716±1.69 1.048±0.00 0.508±0.18 0.029±0.00 2.201±1.83 0.187±0.00 0.260±0.20 N/A 0.467±0.00
ENSG00000244039 ENST00000493762 N/A N/A N/A N/A 0.013±0.00 N/A N/A N/A N/A 0.012±0.00 N/A 0.085±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027706 ENSMUST00000029256 15.726±0.43 14.750±1.22 25.157±0.00 20.227±0.87 10.813±2.67 7.661±1.82 7.061±1.79 34.074±5.48 15.863±5.97 17.936±0.89 10.930±0.98 16.766±7.89 24.826±7.19 8.732±3.20
ENSMUSG00000051860 ENSMUST00000108262 N/A N/A N/A 0.010±0.01 N/A N/A N/A N/A N/A N/A N/A 0.099±0.02 0.005±0.00 N/A
ENSMUST00000172593 N/A N/A N/A 0.005±0.00 0.058±0.00 N/A N/A 0.026±0.00 N/A N/A N/A 0.068±0.00 N/A 0.581±0.00
ENSMUST00000174395 N/A 0.057±0.04 N/A 0.020±0.01 N/A N/A 0.009±0.00 0.015±0.01 0.039±0.02 0.012±0.00 0.017±0.00 0.104±0.07 0.015±0.01 1.241±0.44

Loading