C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00049M_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000060354-ENSDARG00000019951 CGP 7955 2:36947844-36986736
GeneTranscriptPositionBiotype
ENSDARG00000019951 (sec62)
SEC62 homolog (S. cerevisiae) 		ENSDART00000004626 (sec62-001) 36966215-36986736 protein_coding
ENSDART00000143311 (sec62-002) 36966270-36979074 retained_intron
ENSDARG00000060354 (samd7)
sterile alpha motif domain containing 7 		ENSDART00000084958 (samd7-201) 36947951-36963140 protein_coding
ENSDART00000126587 (samd7-001) 36947844-36963370 protein_coding
CIL_00049M_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000187033-ENSG00000008952 CGP 9606 3:169911572-169998373
GeneTranscriptPositionBiotype
ENSG00000008952 (SEC62)
SEC62 homolog (S. cerevisiae) 		ENST00000337002 (SEC62-001) 169966765-169998373 protein_coding
ENST00000460513 (SEC62-004) 169966801-169983253 nonsense_mediated_decay
ENST00000461933 (SEC62-011) 169966635-169968523 processed_transcript
ENST00000469515 (SEC62-005) 169966815-169988359 nonsense_mediated_decay
ENST00000469890 (SEC62-009) 169982869-169983939 retained_intron
ENST00000470355 (SEC62-010) 169985129-169992721 processed_transcript
ENST00000480708 (SEC62-002) 169966808-169993831 protein_coding
ENST00000481435 (SEC62-007) 169966826-169985885 retained_intron
ENST00000487736 (SEC62-008) 169966814-169982857 nonsense_mediated_decay
ENST00000497277 (SEC62-012) 169975451-169982859 retained_intron
ENSG00000187033 (SAMD7)
sterile alpha motif domain containing 7 		ENST00000335556 (SAMD7-002) 169911572-169939175 protein_coding
ENST00000428432 (SAMD7-001) 169911572-169939175 protein_coding
ENST00000487910 (SAMD7-003) 169915411-169938587 nonsense_mediated_decay
ENSG00000240373 (SEC62-AS1)
SEC62 antisense RNA 1 		ENST00000479626 (SEC62-AS1-001) 169978536-169985715 antisense
ENSG00000244039 (RP11-379K17.2)
 ENST00000493762 (RP11-379K17.2-001) 169931998-169933229 processed_pseudogene
CIL_00049M_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000051860-ENSMUSG00000027706 CGP 10090 3:30746293-30821263
GeneTranscriptPositionBiotype
ENSMUSG00000027706 (Sec62)
SEC62 homolog (S. cerevisiae) 		ENSMUST00000029256 (Sec62-201) 30792876-30821263 protein_coding
ENSMUSG00000051860 (Samd7)
sterile alpha motif domain containing 7 		ENSMUST00000108262 (Samd7-001) 30746340-30767174 protein_coding
ENSMUST00000172593 (Samd7-003) 30751045-30765495 nonsense_mediated_decay
ENSMUST00000174395 (Samd7-002) 30746293-30767166 nonsense_mediated_decay

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00049M_0001ENSDARG00000019951ENSDART00000004626ENSDART00000143311ENSDARG00000060354ENSDART00000084958ENSDART00000126587CIL_00049M_0002ENSG00000008952ENST00000337002ENST00000460513ENST00000461933ENST00000469515ENST00000469890ENST00000470355ENST00000480708ENST00000481435ENST00000487736ENST00000497277ENSG00000187033ENST00000335556ENST00000428432ENST00000487910ENSG00000240373ENST00000479626ENSG00000244039ENST00000493762CIL_00049M_0003ENSMUSG00000027706ENSMUST00000029256ENSMUSG00000051860ENSMUST00000108262ENSMUST00000172593ENSMUST00000174395
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00049M_0001ENSDARG00000019951ENSDART00000004626ENSDARG00000060354ENSDART00000084958ENSDART00000126587CIL_00049M_0002ENSG00000008952ENST00000337002ENST00000480708ENSG00000187033ENST00000335556ENST00000487910ENSG00000240373ENST00000479626ENSG00000244039ENST00000493762CIL_00049M_0003ENSMUSG00000027706ENSMUST00000029256ENSMUSG00000051860ENSMUST00000108262ENSMUST00000172593ENSMUST00000174395
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000019951 ENSDART00000004626 N/A N/A N/A 38.100±9.79 N/A N/A 10.846±6.45 18.128±4.03 5.594±0.00 N/A 6.760±0.00 N/A N/A N/A
ENSDART00000143311 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000060354 ENSDART00000084958 N/A N/A N/A 0.085±0.00 N/A N/A 0.124±0.00 0.488±0.00 0.044±0.00 N/A 0.029±0.00 N/A N/A N/A
ENSDART00000126587 N/A N/A N/A N/A N/A N/A 0.071±0.00 0.908±0.00 0.150±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000008952 ENST00000337002 14.984±0.00 12.223±0.00 3.133±0.00 17.094±10.21 12.684±8.93 11.433±7.26 4.096±2.22 11.382±5.25 7.726±2.13 9.611±4.07 5.919±0.00 9.247±3.69 7.133±4.46 11.140±3.42
ENST00000460513 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461933 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469515 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469890 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480708 60.791±0.00 57.317±0.00 3.135±0.00 47.538±44.34 37.703±33.54 89.391±0.00 19.846±0.00 27.937±21.46 17.778±8.86 23.559±19.63 16.657±0.00 27.119±12.79 31.331±29.73 46.518±6.84
ENST00000481435 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487736 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000187033 ENST00000335556 N/A 0.023±0.00 N/A N/A N/A N/A 0.026±0.00 N/A N/A N/A N/A 0.281±0.00 N/A 0.052±0.00
ENST00000428432 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.471±0.00 N/A 0.076±0.00
ENSG00000240373 ENST00000479626 0.180±0.00 1.105±0.00 1.816±0.00 N/A 0.453±0.17 1.716±1.69 1.048±0.00 0.508±0.18 0.029±0.00 2.201±1.83 0.187±0.00 0.260±0.20 N/A 0.467±0.00
ENSG00000244039 ENST00000493762 N/A N/A N/A N/A 0.013±0.00 N/A N/A N/A N/A 0.012±0.00 N/A 0.085±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027706 ENSMUST00000029256 15.726±0.43 14.750±1.22 25.157±0.00 20.227±0.87 10.813±2.67 7.661±1.82 7.061±1.79 34.074±5.48 15.863±5.97 17.936±0.89 10.930±0.98 16.766±7.89 24.826±7.19 8.732±3.20
ENSMUSG00000051860 ENSMUST00000108262 N/A N/A N/A 0.010±0.01 N/A N/A N/A N/A N/A N/A N/A 0.099±0.02 0.005±0.00 N/A
ENSMUST00000172593 N/A N/A N/A 0.005±0.00 0.058±0.00 N/A N/A 0.026±0.00 N/A N/A N/A 0.068±0.00 N/A 0.581±0.00
ENSMUST00000174395 N/A 0.057±0.04 N/A 0.020±0.01 N/A N/A 0.009±0.00 0.015±0.01 0.039±0.02 0.012±0.00 0.017±0.00 0.104±0.07 0.015±0.01 1.241±0.44

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