C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002XU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000008952-ENSG00000173890 CGP 9606 3:169966635-170085403
GeneTranscriptPositionBiotype
ENSG00000008952 (SEC62)
SEC62 homolog (S. cerevisiae) 		ENST00000337002 (SEC62-001) 169966765-169998373 protein_coding
ENST00000460513 (SEC62-004) 169966801-169983253 nonsense_mediated_decay
ENST00000461933 (SEC62-011) 169966635-169968523 processed_transcript
ENST00000469515 (SEC62-005) 169966815-169988359 nonsense_mediated_decay
ENST00000469890 (SEC62-009) 169982869-169983939 retained_intron
ENST00000470355 (SEC62-010) 169985129-169992721 processed_transcript
ENST00000480708 (SEC62-002) 169966808-169993831 protein_coding
ENST00000481435 (SEC62-007) 169966826-169985885 retained_intron
ENST00000487736 (SEC62-008) 169966814-169982857 nonsense_mediated_decay
ENST00000497277 (SEC62-012) 169975451-169982859 retained_intron
ENSG00000173890 (GPR160)
G protein-coupled receptor 160 		ENST00000355897 (GPR160-001) 170037929-170085403 protein_coding
ENST00000473675 (GPR160-011) 170079772-170084403 protein_coding
ENST00000476668 (GPR160-008) 170057841-170063268 processed_transcript
ENST00000478364 (GPR160-005) 170038786-170077341 processed_transcript
ENST00000482710 (GPR160-009) 170077134-170084237 protein_coding
ENST00000482813 (GPR160-006) 170038199-170063151 processed_transcript
ENST00000485735 (GPR160-007) 170049855-170084461 protein_coding
ENST00000491740 (GPR160-004) 170038204-170077276 processed_transcript
ENST00000492492 (GPR160-002) 170038138-170084071 protein_coding
ENST00000492924 (GPR160-010) 170077220-170077971 processed_transcript
ENSG00000201342 (RNU4-38P)
RNA, U4 small nuclear 38, pseudogene 		ENST00000364472 (RNU4-38P-201) 170057301-170057429 snRNA
ENSG00000240373 (SEC62-AS1)
SEC62 antisense RNA 1 		ENST00000479626 (SEC62-AS1-001) 169978536-169985715 antisense
CIL_0002XU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027706-ENSMUSG00000037661 CGP 10090 3:30792876-30897192
GeneTranscriptPositionBiotype
ENSMUSG00000027706 (Sec62)
SEC62 homolog (S. cerevisiae) 		ENSMUST00000029256 (Sec62-201) 30792876-30821263 protein_coding
ENSMUSG00000037661 (Gpr160)
G protein-coupled receptor 160 		ENSMUST00000046748 (Gpr160-005) 30855989-30897190 protein_coding
ENSMUST00000108258 (Gpr160-003) 30856015-30897190 protein_coding
ENSMUST00000108259 (Gpr160-004) 30855950-30897190 protein_coding
ENSMUST00000108261 (Gpr160-001) 30855950-30897190 protein_coding
ENSMUST00000130294 (Gpr160-002) 30855950-30879461 retained_intron
ENSMUST00000147697 (Gpr160-006) 30856143-30895821 protein_coding
ENSMUST00000166278 (Gpr160-201) 30855950-30897192 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002XU_0001ENSG00000008952ENST00000337002ENST00000460513ENST00000461933ENST00000469515ENST00000469890ENST00000470355ENST00000480708ENST00000481435ENST00000487736ENST00000497277ENSG00000173890ENST00000355897ENST00000473675ENST00000476668ENST00000478364ENST00000482710ENST00000482813ENST00000485735ENST00000491740ENST00000492492ENST00000492924ENSG00000201342ENST00000364472ENSG00000240373ENST00000479626CIL_0002XU_0002ENSMUSG00000027706ENSMUST00000029256ENSMUSG00000037661ENSMUST00000046748ENSMUST00000108258ENSMUST00000108259ENSMUST00000108261ENSMUST00000130294ENSMUST00000147697ENSMUST00000166278
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002XU_0001ENSG00000008952ENST00000337002ENST00000480708ENSG00000173890ENST00000355897ENST00000482710ENST00000482813ENST00000485735ENST00000492492ENSG00000201342ENST00000364472ENSG00000240373ENST00000479626CIL_0002XU_0002ENSMUSG00000027706ENSMUST00000029256ENSMUSG00000037661ENSMUST00000046748ENSMUST00000108258ENSMUST00000108259ENSMUST00000108261ENSMUST00000130294ENSMUST00000147697ENSMUST00000166278
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000008952 ENST00000337002 14.984±0.00 12.223±0.00 3.133±0.00 17.094±10.21 12.684±8.93 11.433±7.26 4.096±2.22 11.382±5.25 7.726±2.13 9.611±4.07 5.919±0.00 9.247±3.69 7.133±4.46 11.140±3.42
ENST00000460513 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461933 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469515 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469890 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480708 60.791±0.00 57.317±0.00 3.135±0.00 47.538±44.34 37.703±33.54 89.391±0.00 19.846±0.00 27.937±21.46 17.778±8.86 23.559±19.63 16.657±0.00 27.119±12.79 31.331±29.73 46.518±6.84
ENST00000481435 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487736 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000173890 ENST00000355897 5.991±0.00 1.637±0.00 3.280±0.00 0.213±0.13 2.545±1.11 5.233±0.67 0.346±0.29 7.323±0.00 0.505±0.06 2.145±1.19 0.167±0.00 2.593±1.42 1.148±0.44 2.895±0.00
ENST00000473675 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476668 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478364 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482710 N/A N/A 2.323±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482813 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.531±0.00 0.198±0.00 0.663±0.00
ENST00000485735 N/A N/A N/A 0.274±0.06 N/A N/A 0.568±0.00 0.271±0.00 N/A 5.990±0.00 0.334±0.00 3.685±0.68 0.289±0.00 N/A
ENST00000491740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492492 N/A N/A N/A 0.123±0.00 N/A N/A N/A N/A 0.301±0.00 N/A N/A N/A 0.120±0.00 2.578±0.00
ENST00000492924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000201342 ENST00000364472 N/A 0.136±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000240373 ENST00000479626 0.180±0.00 1.105±0.00 1.816±0.00 N/A 0.453±0.17 1.716±1.69 1.048±0.00 0.508±0.18 0.029±0.00 2.201±1.83 0.187±0.00 0.260±0.20 N/A 0.467±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027706 ENSMUST00000029256 15.726±0.43 14.750±1.22 25.157±0.00 20.227±0.87 10.813±2.67 7.661±1.82 7.061±1.79 34.074±5.48 15.863±5.97 17.936±0.89 10.930±0.98 16.766±7.89 24.826±7.19 8.732±3.20
ENSMUSG00000037661 ENSMUST00000046748 2.907±1.52 N/A 1.865±0.64 0.165±0.00 1.410±0.12 5.079±0.00 0.484±0.08 3.706±0.92 0.534±0.26 0.704±0.08 0.132±0.04 0.636±0.12 0.581±0.38 22.696±7.55
ENSMUST00000108258 3.668±0.00 0.650±0.22 N/A 0.081±0.00 1.290±0.09 4.885±2.60 0.337±0.02 1.891±0.20 0.254±0.18 0.595±0.11 N/A 0.851±0.34 0.382±0.17 N/A
ENSMUST00000108259 0.901±0.12 N/A N/A N/A N/A N/A N/A N/A 0.295±0.09 0.531±0.00 N/A 0.657±0.00 0.214±0.00 N/A
ENSMUST00000108261 N/A 0.694±0.18 N/A N/A 1.006±0.08 N/A N/A 2.163±0.20 N/A N/A 0.363±0.00 0.993±0.70 N/A N/A
ENSMUST00000130294 N/A 0.354±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.018±0.00 0.087±0.00 N/A N/A
ENSMUST00000147697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.062±0.00 N/A N/A 16.429±0.00
ENSMUST00000166278 8.655±0.87 1.134±0.46 N/A 0.301±0.00 4.615±1.48 5.248±1.57 0.405±0.05 8.794±2.17 0.423±0.28 2.385±0.58 0.048±0.01 1.511±0.78 0.512±0.00 45.105±20.69

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