C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC62 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000337002 SEC62-001 ENSG00000008952 9606 + 3:169966765-169998373 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000337002
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000337002 14.984±0.00 12.223±0.00 3.133±0.00 17.094±10.21 12.684±8.93 11.433±7.26 4.096±2.22 11.382±5.25 7.726±2.13 9.611±4.07 5.919±0.00 9.247±3.69 7.133±4.46 11.140±3.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00049M CIL_00049M_0002 CGP 3:169911572-169998373
CIL_0002XU CIL_0002XU_0001 CGP 3:169966635-170085403

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 TAS receptor activity
GO:0005524 IEA ATP binding
GO:0005783 TAS endoplasmic reticulum
GO:0005791 ISS rough endoplasmic reticulum
GO:0006613 TAS cotranslational protein targeting to membrane
GO:0006620 IMP posttranslational protein targeting to membrane
GO:0006810 IEA transport
GO:0008565 IEA protein transporter activity
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0042626 IEA ATPase activity, coupled to transmembrane movement of substances
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029256 Sec62-201 protein_coding Mus_musculus 0 1997
ENSMUST00000037912 Ssh2-001 protein_coding Mus_musculus 0.000000001 71
ENSMUST00000074912 2010012O05Rik-201 protein_coding Mus_musculus 0.000003 60

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