C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin protein ligase E3C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000009335 UBE3C 9606 + 7:157138913-157269372 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000348165 UBE3C-001 157138913-157269372 protein_coding
  ENST00000389103 UBE3C-002 157139195-157189294 protein_coding
  ENST00000430750 UBE3C-005 157139279-157170450 nonsense_mediated_decay
  ENST00000469336 UBE3C-006 157207513-157217245 retained_intron
  ENST00000470408 UBE3C-004 157220668-157269116 retained_intron
  ENST00000474153 UBE3C-009 157256687-157267676 retained_intron
  ENST00000494532 UBE3C-008 157225502-157248624 retained_intron
  ENST00000497368 UBE3C-007 157225500-157231815 retained_intron
  ENST00000611269 UBE3C-201 157138916-157189296 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000348165
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000348165 12.691±0.00 5.807±0.00 1.770±0.00 9.142±0.11 12.291±2.69 11.697±0.96 9.812±4.20 7.811±3.73 8.019±3.31 6.574±0.95 14.300±1.69 12.150±5.32 5.441±5.17 21.851±3.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007PG CIL_0007PG_0001 UCNEbase 7:156746986-157209208
CIL_0005Z2 CIL_0005Z2_0001 CGP 7:156994051-157269372

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000209 IDA protein polyubiquitination
GO:0000502 IEA proteasome complex
GO:0004842 IDA:IEA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005622 IC intracellular
GO:0005634 IBA nucleus
GO:0005737 IBA cytoplasm
GO:0016874 IEA ligase activity
GO:0042787 IBA protein ubiquitination involved in ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035978 ube3c ubiquitin protein ligase E3C protein_coding Danio_rerio
ENSMUSG00000039000 Ube3c ubiquitin protein ligase E3C protein_coding Mus_musculus

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