C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007PG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
LMBR1 UCNEbase 9606 7:156746986-157209208
GeneTranscriptPositionBiotype
ENSG00000009335 (UBE3C)
ubiquitin protein ligase E3C 		ENST00000348165 (UBE3C-001) 157138913-157269372 protein_coding
ENST00000389103 (UBE3C-002) 157139195-157189294 protein_coding
ENST00000430750 (UBE3C-005) 157139279-157170450 nonsense_mediated_decay
ENST00000469336 (UBE3C-006) 157207513-157217245 retained_intron
ENST00000470408 (UBE3C-004) 157220668-157269116 retained_intron
ENST00000474153 (UBE3C-009) 157256687-157267676 retained_intron
ENST00000494532 (UBE3C-008) 157225502-157248624 retained_intron
ENST00000497368 (UBE3C-007) 157225500-157231815 retained_intron
ENST00000611269 (UBE3C-201) 157138916-157189296 protein_coding
ENSG00000105983 (LMBR1)
limb development membrane protein 1 		ENST00000353442 (LMBR1-001) 156677791-156893230 protein_coding
ENST00000359422 (LMBR1-201) 156680877-156893208 protein_coding
ENST00000414218 (LMBR1-010) 156796474-156893179 nonsense_mediated_decay
ENST00000415428 (LMBR1-004) 156682211-156892987 protein_coding
ENST00000430278 (LMBR1-008) 156763110-156893183 processed_transcript
ENST00000430825 (LMBR1-019) 156668946-156682093 processed_transcript
ENST00000433968 (LMBR1-011) 156826634-156893183 processed_transcript
ENST00000434278 (LMBR1-009) 156763125-156893182 nonsense_mediated_decay
ENST00000434453 (LMBR1-002) 156822241-156893216 nonsense_mediated_decay
ENST00000434503 (LMBR1-014) 156688098-156893208 nonsense_mediated_decay
ENST00000444719 (LMBR1-013) 156763143-156893157 nonsense_mediated_decay
ENST00000448926 (LMBR1-005) 156681520-156796493 nonsense_mediated_decay
ENST00000454132 (LMBR1-003) 156682991-156893159 nonsense_mediated_decay
ENST00000461469 (LMBR1-007) 156763703-156892579 processed_transcript
ENST00000461603 (LMBR1-015) 156688103-156747978 processed_transcript
ENST00000477983 (LMBR1-016) 156733861-156763177 retained_intron
ENST00000485985 (LMBR1-012) 156833478-156893183 retained_intron
ENST00000486837 (LMBR1-017) 156688114-156726103 retained_intron
ENST00000498034 (LMBR1-006) 156826599-156892590 processed_transcript
ENST00000609081 (LMBR1-020) 156676251-156679109 processed_transcript
ENST00000609774 (LMBR1-018) 156677843-156679133 processed_transcript
ENSG00000130675 (MNX1)
motor neuron and pancreas homeobox 1 		ENST00000252971 (MNX1-001) 157004853-157010651 protein_coding
ENST00000425745 (MNX1-005) 157005842-157009287 protein_coding
ENST00000428439 (MNX1-004) 157005842-157009435 protein_coding
ENST00000469500 (MNX1-006) 156994051-157009075 protein_coding
ENST00000474448 (MNX1-007) 157005842-157009435 nonsense_mediated_decay
ENST00000479817 (MNX1-003) 156994051-157009697 protein_coding
ENST00000543409 (MNX1-201) 157004853-157009435 protein_coding
ENST00000605400 (MNX1-008) 157007539-157009291 retained_intron
ENSG00000146909 (NOM1)
nucleolar protein with MIF4G domain 1 		ENST00000275820 (NOM1-001) 156949723-156973182 protein_coding
ENST00000460332 (NOM1-002) 156954112-156960118 processed_transcript
ENST00000469271 (NOM1-003) 156962171-156964125 retained_intron
ENST00000472491 (NOM1-006) 156962168-156964235 retained_intron
ENST00000475176 (NOM1-004) 156959996-156963352 retained_intron
ENST00000485661 (NOM1-007) 156966159-156969196 retained_intron
ENST00000486131 (NOM1-008) 156968755-156970083 retained_intron
ENST00000489850 (NOM1-005) 156962171-156963475 retained_intron
ENSG00000206938 (RNU4-31P)
RNA, U4 small nuclear 31, pseudogene 		ENST00000384211 (RNU4-31P-201) 156872078-156872218 snRNA
ENSG00000225224 (RP4-814D15.2)
 ENST00000429552 (RP4-814D15.2-001) 157192368-157192832 processed_pseudogene
ENSG00000229365 (RP4-639J15.2)
 ENST00000467608 (RP4-639J15.2-001) 157087955-157088543 processed_pseudogene
ENSG00000230033 (RP5-1121A15.3)
 ENST00000427073 (RP5-1121A15.3-001) 156944721-156945645 lincRNA
ENSG00000235029 (MNX1-AS2)
MNX1 antisense RNA 2 		ENST00000429228 (MNX1-AS2-001) 157006307-157007132 antisense
ENSG00000236018 (RP4-814D15.1)
 ENST00000451057 (RP4-814D15.1-001) 157197600-157198511 processed_pseudogene
ENSG00000236102 (RP4-639J15.1)
 ENST00000426169 (RP4-639J15.1-001) 157057709-157058514 lincRNA
ENSG00000243479 (MNX1-AS1)
MNX1 antisense RNA 1 (head to head) 		ENST00000480284 (MNX1-AS1-001) 157010805-157016426 lincRNA
ENSG00000269446 (RP4-639J15.3)
 ENST00000594086 (RP4-639J15.3-001) 157109980-157111072 lincRNA
CIL_0007PG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
LMBR1 UCNEbase 10090 5:29276112-29620813
GeneTranscriptPositionBiotype
ENSMUSG00000001566 (Mnx1)
motor neuron and pancreas homeobox 1 		ENSMUST00000001608 (Mnx1-201) 29473261-29478470 protein_coding
ENSMUST00000165512 (Mnx1-001) 29473034-29478470 protein_coding
ENSMUSG00000001569 (Nom1)
nucleolar protein with MIF4G domain 1 		ENSMUST00000001611 (Nom1-001) 29434664-29453506 protein_coding
ENSMUST00000146347 (Nom1-002) 29441318-29446355 retained_intron
ENSMUSG00000010721 (Lmbr1)
limb region 1 		ENSMUST00000055195 (Lmbr1-201) 29229814-29378390 protein_coding
ENSMUST00000179191 (Lmbr1-202) 29229814-29378390 protein_coding
ENSMUSG00000039000 (Ube3c)
ubiquitin protein ligase E3C 		ENSMUST00000049453 (Ube3c-201) 29569242-29676077 protein_coding
ENSMUSG00000078182 (Gm6083)
predicted gene 6083 		ENSMUST00000075518 (Gm6083-001) 29538153-29538509 processed_pseudogene
ENSMUSG00000097561 (4632411P08Rik)
RIKEN cDNA 4632411P08 gene 		ENSMUST00000181005 (4632411P08Rik-201) 29378699-29390488 lincRNA
CIL_0007PG_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
LMBR1 UCNEbase 7955 7:42003038-42077877
GeneTranscriptPositionBiotype
ENSDARG00000024092 (lmbr1)
limb region 1 homolog (mouse) 		ENSDART00000044497 (lmbr1-001) 42050533-42107062 protein_coding
ENSDARG00000035978 (ube3c)
ubiquitin protein ligase E3C 		ENSDART00000125313 (ube3c-201) 41976607-42021917 protein_coding
ENSDART00000134547 (ube3c-001) 41978155-42023338 protein_coding
ENSDARG00000035984 (mnx1)
motor neuron and pancreas homeobox 1 		ENSDART00000052236 (mnx1-001) 42031015-42033352 protein_coding
ENSDARG00000060027 (nom1)
nucleolar protein with MIF4G domain 1 		ENSDART00000084153 (nom1-001) 42037543-42050504 protein_coding
ENSDART00000142315 (nom1-002) 42037543-42048006 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007PG_0001ENSG00000009335ENST00000348165ENSG00000105983ENST00000353442ENST00000359422ENST00000415428ENST00000448926ENST00000454132ENSG00000130675ENST00000252971ENST00000543409ENST00000605400ENSG00000146909ENST00000275820ENST00000475176ENST00000485661ENST00000486131ENSG00000206938ENST00000384211ENSG00000225224ENST00000429552ENSG00000229365ENST00000467608ENSG00000230033ENST00000427073ENSG00000235029ENST00000429228ENSG00000236018ENST00000451057ENSG00000236102ENST00000426169ENSG00000243479ENST00000480284ENSG00000269446ENST00000594086CIL_0007PG_0002ENSMUSG00000001566ENSMUST00000001608ENSMUST00000165512ENSMUSG00000001569ENSMUST00000001611ENSMUST00000146347ENSMUSG00000010721ENSMUST00000055195ENSMUST00000179191ENSMUSG00000039000ENSMUST00000049453ENSMUSG00000078182ENSMUST00000075518ENSMUSG00000097561ENSMUST00000181005CIL_0007PG_0003ENSDARG00000024092ENSDART00000044497ENSDARG00000035978ENSDART00000125313ENSDART00000134547ENSDARG00000035984ENSDART00000052236ENSDARG00000060027ENSDART00000084153ENSDART00000142315
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000009335 ENST00000348165 12.691±0.00 5.807±0.00 1.770±0.00 9.142±0.11 12.291±2.69 11.697±0.96 9.812±4.20 7.811±3.73 8.019±3.31 6.574±0.95 14.300±1.69 12.150±5.32 5.441±5.17 21.851±3.47
ENST00000389103 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469336 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470408 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474153 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611269 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000105983 ENST00000353442 N/A N/A 0.897±0.00 1.675±0.00 0.981±0.58 N/A 0.422±0.00 1.650±0.00 N/A 1.531±0.83 N/A 2.012±0.80 N/A N/A
ENST00000359422 1.361±0.00 1.135±0.00 2.068±0.00 2.883±0.00 2.438±1.53 2.060±0.67 0.836±0.21 1.976±0.00 N/A 1.806±0.00 0.828±0.15 2.333±0.56 1.146±0.00 6.786±0.00
ENST00000414218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415428 2.043±0.00 1.528±0.00 1.943±0.00 N/A 1.307±0.00 2.475±0.00 1.108±0.18 N/A 3.675±0.00 5.311±0.00 N/A 5.120±0.00 2.585±0.00 N/A
ENST00000430278 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434278 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448926 3.797±0.00 2.083±0.00 N/A 3.480±0.27 1.585±0.00 3.028±0.00 1.794±0.00 3.552±0.78 1.587±0.00 1.965±0.00 1.119±0.17 3.939±2.19 2.836±0.70 9.420±0.00
ENST00000454132 2.829±0.00 1.765±0.00 2.039±0.00 5.134±1.29 2.685±1.11 2.609±0.00 1.592±0.35 5.915±0.00 3.272±0.00 3.471±0.00 1.030±0.00 6.474±3.55 4.229±2.14 22.965±0.00
ENST00000461469 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485985 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486837 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498034 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609774 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000130675 ENST00000252971 N/A N/A N/A N/A 0.112±0.00 0.472±0.16 N/A 0.177±0.00 N/A N/A 0.050±0.00 3.098±2.35 0.251±0.00 0.552±0.16
ENST00000425745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428439 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474448 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479817 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543409 N/A N/A N/A N/A N/A 0.121±0.00 N/A N/A N/A N/A N/A 1.328±0.46 0.180±0.00 0.400±0.01
ENST00000605400 N/A N/A N/A N/A 0.174±0.00 0.252±0.16 N/A N/A N/A N/A N/A 0.581±0.20 N/A 0.113±0.00
ENSG00000146909 ENST00000275820 1.599±0.00 3.239±0.00 N/A 0.754±0.37 2.396±0.00 0.864±0.43 1.223±0.00 2.755±0.00 1.216±0.20 1.561±0.00 2.084±1.93 3.424±2.00 1.931±0.35 3.234±0.18
ENST00000460332 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472491 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475176 N/A N/A 1.450±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485661 N/A N/A N/A N/A N/A N/A 1.597±0.00 N/A N/A N/A 3.164±0.00 N/A N/A N/A
ENST00000486131 N/A N/A N/A N/A N/A N/A N/A 1.271±0.00 N/A N/A N/A N/A N/A N/A
ENST00000489850 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000206938 ENST00000384211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.225±0.00
ENSG00000225224 ENST00000429552 0.114±0.00 0.121±0.00 1.470±0.00 0.206±0.06 0.400±0.28 0.511±0.29 0.204±0.15 0.270±0.00 0.222±0.00 0.503±0.47 N/A 0.659±0.42 0.321±0.00 0.877±0.77
ENSG00000229365 ENST00000467608 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.541±0.00
ENSG00000230033 ENST00000427073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.548±0.26
ENSG00000235029 ENST00000429228 N/A 0.079±0.00 N/A N/A N/A N/A N/A N/A 0.152±0.00 N/A 0.647±0.00 N/A N/A 0.225±0.00
ENSG00000236018 ENST00000451057 0.062±0.00 0.032±0.00 N/A N/A 0.422±0.36 0.377±0.00 N/A 0.591±0.00 0.374±0.32 N/A N/A 0.056±0.00 0.034±0.00 0.058±0.00
ENSG00000236102 ENST00000426169 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.719±0.11
ENSG00000243479 ENST00000480284 0.053±0.00 N/A N/A N/A 0.123±0.00 0.056±0.00 N/A N/A N/A N/A N/A 1.575±1.18 N/A 0.713±0.05
ENSG00000269446 ENST00000594086 0.060±0.00 0.185±0.00 N/A 0.052±0.00 0.048±0.00 0.250±0.14 0.060±0.00 0.031±0.00 N/A 0.069±0.00 N/A 0.036±0.00 N/A 0.332±0.20
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001566 ENSMUST00000001608 N/A N/A N/A 0.043±0.00 N/A 0.250±0.00 N/A N/A 0.005±0.00 0.012±0.00 N/A N/A 0.026±0.01 0.262±0.07
ENSMUST00000165512 N/A N/A N/A 0.015±0.00 N/A 0.867±0.27 N/A N/A N/A N/A N/A N/A 0.102±0.07 0.293±0.00
ENSMUSG00000001569 ENSMUST00000001611 2.091±0.44 4.486±2.01 3.007±0.18 2.843±1.26 2.560±1.59 2.429±1.85 1.660±0.13 2.464±0.81 2.367±0.50 3.610±1.21 2.573±0.20 4.567±2.38 6.930±4.09 3.035±2.15
ENSMUST00000146347 N/A N/A N/A N/A 5.391±0.00 N/A 2.329±0.00 N/A N/A N/A N/A 13.255±0.00 28.970±10.83 N/A
ENSMUSG00000010721 ENSMUST00000055195 2.661±0.22 2.515±0.79 4.985±0.37 4.437±1.99 2.389±0.51 1.686±0.74 2.375±0.51 1.775±0.48 0.714±0.18 2.939±0.14 1.964±0.45 2.226±0.41 2.546±0.89 3.278±1.29
ENSMUST00000179191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.694±0.00 N/A 1.229±0.00 N/A
ENSMUSG00000039000 ENSMUST00000049453 11.219±1.78 9.343±1.35 8.849±0.54 12.188±3.08 7.036±2.27 9.296±0.95 8.591±0.30 9.619±0.33 7.127±1.81 8.831±0.85 10.742±0.46 12.492±1.79 10.546±2.98 10.612±7.19
ENSMUSG00000078182 ENSMUST00000075518 0.180±0.00 N/A 0.040±0.00 0.039±0.00 N/A 0.517±0.15 N/A N/A N/A N/A N/A 0.645±0.37 0.286±0.00 N/A
ENSMUSG00000097561 ENSMUST00000181005 0.053±0.04 N/A 0.137±0.01 0.060±0.03 0.039±0.01 0.112±0.08 0.012±0.00 0.029±0.02 0.020±0.01 0.054±0.01 0.020±0.01 0.059±0.03 0.145±0.09 0.279±0.19
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000024092 ENSDART00000044497 N/A N/A N/A 3.648±2.56 N/A N/A 2.314±0.63 3.780±0.42 0.410±0.00 N/A 11.142±0.00 N/A N/A N/A
ENSDARG00000035978 ENSDART00000125313 N/A N/A N/A 3.675±1.24 N/A N/A 3.542±1.57 4.763±0.45 0.407±0.00 N/A 1.349±0.00 N/A N/A N/A
ENSDART00000134547 N/A N/A N/A N/A N/A N/A N/A 1.818±0.00 0.146±0.00 N/A N/A N/A N/A N/A
ENSDARG00000035984 ENSDART00000052236 N/A N/A N/A 0.071±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000060027 ENSDART00000084153 N/A N/A N/A 1.228±0.21 N/A N/A N/A 1.560±0.00 N/A N/A 0.202±0.00 N/A N/A N/A
ENSDART00000142315 N/A N/A N/A 2.712±2.11 N/A N/A 1.950±1.30 4.711±3.34 1.648±0.00 N/A 1.543±0.00 N/A N/A N/A

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