C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: non-SMC condensin I complex, subunit D2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000539084 NCAPD2-003 ENSG00000010292 9606 + 12:6494099-6531476 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonLiverOvaryPlacentaTestisENST00000539084
Transcript ID Breast Colon Liver Ovary Placenta Testis
ENST00000539084 3.370±0.00 1.056±0.00 1.753±0.00 31.572±0.00 8.662±4.66 12.758±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0007076 IEA mitotic chromosome condensation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043848 Ncapd2-001 protein_coding Mus_musculus 0 4154
ENSMUST00000191080 Ncapd2-008 processed_transcript Mus_musculus 0 671
ENSMUST00000185624 Ncapd2-009 retained_intron Mus_musculus 0 651
ENSMUST00000188762 Ncapd2-002 nonsense_mediated_decay Mus_musculus 0 575
ENSMUST00000188410 Ncapd2-011 retained_intron Mus_musculus 0 558
ENSMUST00000189706 Ncapd2-006 retained_intron Mus_musculus 0 544
ENSMUST00000186561 Ncapd2-005 retained_intron Mus_musculus 0 475
ENSMUST00000188665 Ncapd2-012 retained_intron Mus_musculus 0 466
ENSMUST00000186667 Ncapd2-007 retained_intron Mus_musculus 0 457
ENSMUST00000186210 Ncapd2-004 retained_intron Mus_musculus 0 448
ENSMUST00000188306 Ncapd2-010 retained_intron Mus_musculus 0 355
ENSMUST00000188119 Ncapd2-013 retained_intron Mus_musculus 0 315

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