C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: non-SMC condensin I complex, subunit D2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000315579 NCAPD2-001 ENSG00000010292 9606 + 12:6493379-6531955 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000315579
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000315579 5.208±0.00 3.621±0.00 2.666±1.08 2.812±1.81 2.632±0.26 2.962±0.00 4.071±0.00 1.113±0.14 1.457±0.07 1.643±0.00 6.816±2.34 8.753±0.87 11.874±0.21

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000228 IDA nuclear chromosome
GO:0000278 TAS mitotic cell cycle
GO:0000793 IDA condensed chromosome
GO:0000796 IDA condensin complex
GO:0000797 NAS condensin core heterodimer
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006886 IEA intracellular protein transport
GO:0007067 IEA mitotic nuclear division
GO:0007076 IEA:NAS mitotic chromosome condensation
GO:0016020 IDA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0030117 IEA membrane coat
GO:0030261 IEA chromosome condensation
GO:0042393 NAS histone binding
GO:0045120 IEA pronucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043848 Ncapd2-001 protein_coding Mus_musculus 0 4399
ENSMUST00000188762 Ncapd2-002 nonsense_mediated_decay Mus_musculus 0 739
ENSMUST00000191080 Ncapd2-008 processed_transcript Mus_musculus 0 671
ENSMUST00000185624 Ncapd2-009 retained_intron Mus_musculus 0 651
ENSMUST00000188410 Ncapd2-011 retained_intron Mus_musculus 0 558
ENSMUST00000189706 Ncapd2-006 retained_intron Mus_musculus 0 544
ENSMUST00000186561 Ncapd2-005 retained_intron Mus_musculus 0 475
ENSMUST00000188665 Ncapd2-012 retained_intron Mus_musculus 0 466
ENSMUST00000186667 Ncapd2-007 retained_intron Mus_musculus 0 457
ENSMUST00000186210 Ncapd2-004 retained_intron Mus_musculus 0 451
ENSMUST00000188306 Ncapd2-010 retained_intron Mus_musculus 0 355
ENSMUST00000188119 Ncapd2-013 retained_intron Mus_musculus 0 315

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