C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: intermediate filament family orphan 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396840 IFFO1-008 ENSG00000010295 9606 - 12:6539528-6556071 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainHeartMuscleOvaryENST00000396840
Transcript ID Adipose Brain Heart Muscle Ovary
ENST00000396840 2.626±0.00 3.255±1.40 0.838±0.63 1.558±0.00 0.202±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005882 IEA intermediate filament

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119527 Iffo1-001 protein_coding Mus_musculus 0 2143
ENSMUST00000088276 Iffo1-202 protein_coding Mus_musculus 0 2111
ENSMUST00000051171 Iffo1-201 protein_coding Mus_musculus 0 2097
ENSMUST00000117675 Iffo1-002 protein_coding Mus_musculus 0 2084
ENSMUST00000141230 Iffo1-004 retained_intron Mus_musculus 0 1596
ENSMUST00000148835 Iffo1-007 protein_coding Mus_musculus 0 1552
ENSMUST00000144364 Iffo1-005 nonsense_mediated_decay Mus_musculus 0 1197
ENSMUST00000139071 Iffo1-008 retained_intron Mus_musculus 0 1029
ENSMUST00000135559 Iffo1-003 retained_intron Mus_musculus 0 950
ENSMUST00000153006 Iffo1-011 processed_transcript Mus_musculus 0 521
ENSMUST00000150474 Iffo1-010 retained_intron Mus_musculus 0 507
ENSMUST00000150417 Iffo1-009 processed_transcript Mus_musculus 0 298
ENSMUST00000174078 Iffo2-002 protein_coding Mus_musculus 0 292
ENSMUST00000178644 Gm21969-001 nonsense_mediated_decay Mus_musculus 0 265
ENSMUST00000040023 Iffo2-201 protein_coding Mus_musculus 0 265
ENSMUST00000123827 Iffo2-001 protein_coding Mus_musculus 0 265

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