C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: intermediate filament family orphan 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000487279 IFFO1-007 ENSG00000010295 9606 - 12:6539528-6556071 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonENST00000487279
Transcript ID Colon
ENST00000487279 0.624±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005882 IEA intermediate filament

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119527 Iffo1-001 protein_coding Mus_musculus 0 1290
ENSMUST00000088276 Iffo1-202 protein_coding Mus_musculus 0 1286
ENSMUST00000148835 Iffo1-007 protein_coding Mus_musculus 0 1282
ENSMUST00000051171 Iffo1-201 protein_coding Mus_musculus 0 1249
ENSMUST00000117675 Iffo1-002 protein_coding Mus_musculus 0 1249
ENSMUST00000144364 Iffo1-005 nonsense_mediated_decay Mus_musculus 0 955
ENSMUST00000135559 Iffo1-003 retained_intron Mus_musculus 0 935
ENSMUST00000139071 Iffo1-008 retained_intron Mus_musculus 0 846
ENSMUST00000141230 Iffo1-004 retained_intron Mus_musculus 0 802
ENSMUST00000153006 Iffo1-011 processed_transcript Mus_musculus 0 521
ENSMUST00000150474 Iffo1-010 retained_intron Mus_musculus 0 512
ENSMUST00000150417 Iffo1-009 processed_transcript Mus_musculus 0 374
ENSMUST00000178644 Gm21969-001 nonsense_mediated_decay Mus_musculus 0 255
ENSMUST00000040023 Iffo2-201 protein_coding Mus_musculus 0 255
ENSMUST00000174078 Iffo2-002 protein_coding Mus_musculus 0 255
ENSMUST00000123827 Iffo2-001 protein_coding Mus_musculus 0 255

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