C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: stabilin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000010327 STAB1 9606 + 3:52495338-52524495 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000321725 STAB1-001 52495338-52524495 protein_coding
  ENST00000461325 STAB1-003 52516178-52520246 retained_intron
  ENST00000462681 STAB1-005 52521568-52523323 retained_intron
  ENST00000462741 STAB1-006 52521361-52524493 retained_intron
  ENST00000469989 STAB1-009 52523278-52524495 protein_coding
  ENST00000479355 STAB1-007 52495369-52501630 retained_intron
  ENST00000481607 STAB1-002 52495359-52508543 retained_intron
  ENST00000481626 STAB1-004 52518801-52523476 retained_intron
  ENST00000484850 STAB1-008 52507961-52509476 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000321725ENST00000462741
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000321725 23.753±0.00 34.602±0.00 2.110±0.00 10.929±3.24 6.774±1.28 6.121±1.57 5.707±0.95 13.212±4.40 5.190±0.06 7.494±2.12 30.910±6.64 6.758±0.00
ENST00000462741 N/A 66.688±0.00 N/A N/A N/A N/A N/A 18.038±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0001 VISTA 3:52127966-52731115

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005041 IDA low-density lipoprotein receptor activity
GO:0005044 IDA scavenger receptor activity
GO:0005509 IEA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005540 IEA hyaluronic acid binding
GO:0005886 TAS plasma membrane
GO:0005887 IDA integral component of plasma membrane
GO:0006898 TAS receptor-mediated endocytosis
GO:0006954 IEA inflammatory response
GO:0007155 NAS:IEA cell adhesion
GO:0007267 IDA cell-cell signaling
GO:0015035 NAS protein disulfide oxidoreductase activity
GO:0016525 IMP negative regulation of angiogenesis
GO:0030169 IDA low-density lipoprotein particle binding
GO:0030666 TAS endocytic vesicle membrane
GO:0042742 IDA defense response to bacterium
GO:0055114 NAS oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076484 stab1 stabilin 1 protein_coding Danio_rerio
ENSMUSG00000042286 Stab1 stabilin 1 protein_coding Mus_musculus

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