C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stabilin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000321725 STAB1-001 ENSG00000010327 9606 + 3:52495338-52524495 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000321725
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000321725 23.753±0.00 34.602±0.00 2.110±0.00 10.929±3.24 6.774±1.28 6.121±1.57 5.707±0.95 13.212±4.40 5.190±0.06 7.494±2.12 30.910±6.64 6.758±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0001 VISTA 3:52127966-52731115

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005041 IDA low-density lipoprotein receptor activity
GO:0005044 IDA scavenger receptor activity
GO:0005509 IEA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005540 IEA hyaluronic acid binding
GO:0005886 TAS plasma membrane
GO:0005887 IDA integral component of plasma membrane
GO:0006898 TAS receptor-mediated endocytosis
GO:0006954 IEA inflammatory response
GO:0007155 NAS:IEA cell adhesion
GO:0007267 IDA cell-cell signaling
GO:0015035 NAS protein disulfide oxidoreductase activity
GO:0016525 IMP negative regulation of angiogenesis
GO:0030169 IDA low-density lipoprotein particle binding
GO:0030666 TAS endocytic vesicle membrane
GO:0042742 IDA defense response to bacterium
GO:0055114 NAS oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036618 Stab1-001 protein_coding Mus_musculus 0 6606
ENSMUST00000161129 Stab1-004 retained_intron Mus_musculus 0 1912
ENSMUST00000162169 Stab1-006 retained_intron Mus_musculus 0 1061
ENSMUST00000159480 Stab1-007 retained_intron Mus_musculus 0 553
ENSMUST00000159249 Stab1-008 protein_coding Mus_musculus 0 483
ENSMUST00000160720 Stab1-005 retained_intron Mus_musculus 0 422
ENSMUST00000161631 Stab1-012 retained_intron Mus_musculus 0 261
ENSMUST00000160024 Stab1-013 protein_coding Mus_musculus 0 257
ENSMUST00000159208 Stab1-009 processed_transcript Mus_musculus 5e-39 169
ENSMUST00000161464 Stab1-010 retained_intron Mus_musculus 1e-25 124
ENSMUST00000159757 Stab1-003 retained_intron Mus_musculus 1e-24 121
ENSMUST00000090212 Nt5dc2-201 protein_coding Mus_musculus 3e-16 94

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