C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: stabilin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000042286 Stab1 10090 - 14:31139013-31168641 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000036618 Stab1-001 31139013-31168641 protein_coding
  ENSMUST00000159208 Stab1-009 31139017-31140174 processed_transcript
  ENSMUST00000159249 Stab1-008 31141633-31143192 protein_coding
  ENSMUST00000159480 Stab1-007 31139013-31140866 retained_intron
  ENSMUST00000159532 Stab1-002 31158510-31168595 retained_intron
  ENSMUST00000159757 Stab1-003 31156637-31161829 retained_intron
  ENSMUST00000160024 Stab1-013 31139013-31139848 protein_coding
  ENSMUST00000160720 Stab1-005 31139019-31143725 retained_intron
  ENSMUST00000161129 Stab1-004 31139017-31145453 retained_intron
  ENSMUST00000161464 Stab1-010 31156637-31157384 retained_intron
  ENSMUST00000161631 Stab1-012 31139969-31140943 retained_intron
  ENSMUST00000162169 Stab1-006 31139013-31142832 retained_intron
  ENSMUST00000162763 Stab1-011 31142384-31142997 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036618ENSMUST00000159480ENSMUST00000161129
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036618 22.681±0.62 15.874±1.80 11.675±1.40 4.154±0.74 18.950±4.74 12.866±0.71 9.070±0.93 6.416±0.37 5.883±1.15 21.569±3.47 1.326±0.37 25.206±8.19 3.961±1.11 1.235±0.07
ENSMUST00000159480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.533±0.63 N/A N/A N/A
ENSMUST00000161129 25.008±5.07 10.985±2.38 18.678±1.35 N/A 18.555±3.94 13.680±1.40 7.584±0.71 5.293±0.95 6.610±2.29 15.944±2.70 1.332±0.26 18.603±2.25 7.303±0.00 1.146±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0002 VISTA 14:30932335-31535522
CIL_00002S CIL_00002S_0002 CGP 14:31139013-31216946

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005041 IEA low-density lipoprotein receptor activity
GO:0005044 IEA scavenger receptor activity
GO:0005540 IEA hyaluronic acid binding
GO:0005737 ISO cytoplasm
GO:0005887 IEA integral component of plasma membrane
GO:0007155 IEA cell adhesion
GO:0007267 IEA cell-cell signaling
GO:0016525 IEA negative regulation of angiogenesis
GO:0030169 IEA low-density lipoprotein particle binding
GO:0042742 IEA defense response to bacterium

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076484 stab1 stabilin 1 protein_coding Danio_rerio
ENSG00000010327 STAB1 stabilin 1 protein_coding Homo_sapiens

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