C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000011007 TCEB3 9606 + 1:23743155-23762059 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000418390 TCEB3-001 23743155-23762059 protein_coding
  ENST00000487554 TCEB3-002 23744034-23750944 processed_transcript
  ENST00000609199 TCEB3-003 23743472-23759893 protein_coding
  ENST00000613537 TCEB3-201 23743366-23762040 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000418390ENST00000487554ENST00000609199ENST00000613537
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000418390 3.555±0.00 3.068±0.00 N/A N/A 6.022±0.00 N/A N/A 2.145±0.00 4.597±0.00 N/A N/A 5.349±0.00 1.556±0.62 2.669±0.00
ENST00000487554 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.411±0.00
ENST00000609199 6.571±0.00 3.810±0.00 2.278±0.00 2.832±0.67 3.988±0.92 2.538±0.00 2.961±1.53 3.351±1.33 4.466±2.36 5.814±1.45 1.726±0.49 4.656±1.74 5.437±0.88 9.659±2.50
ENST00000613537 5.264±0.00 3.071±0.00 N/A 1.734±0.00 N/A N/A 3.739±0.00 3.582±0.00 3.498±0.00 3.704±1.44 3.035±0.79 3.437±1.36 3.037±0.19 3.393±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WC CIL_0002WC_0002 CGP 1:23743155-23788232

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005615 IDA extracellular space
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0010467 TAS gene expression
GO:0016021 IEA integral component of membrane
GO:0016032 TAS viral process
GO:0050434 TAS positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011637 tceb3 transcription elongation factor B (SIII), polypeptide 3 protein_coding Danio_rerio
ENSMUSG00000028668 Tceb3 transcription elongation factor B (SIII), polypeptide 3 protein_coding Mus_musculus

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