C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tetraspanin 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000011105 TSPAN9 9606 + 12:3077355-3286564 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000011898 TSPAN9-001 3077377-3286558 protein_coding
  ENST00000407263 TSPAN9-003 3201175-3282108 protein_coding
  ENST00000431374 TSPAN9-006 3215251-3281281 processed_transcript
  ENST00000444315 TSPAN9-005 3077377-3279006 nonsense_mediated_decay
  ENST00000492305 TSPAN9-002 3272912-3280471 processed_transcript
  ENST00000537971 TSPAN9-201 3077355-3286564 protein_coding
  ENST00000539631 TSPAN9-004 3077428-3084210 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000011898ENST00000407263ENST00000431374ENST00000537971
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000011898 17.313±0.00 6.127±0.00 N/A 1.575±1.13 5.452±0.00 9.620±0.00 7.089±0.00 5.936±3.55 5.398±0.00 10.684±0.00 0.614±0.00 9.351±6.22 34.041±6.97 3.075±0.43
ENST00000407263 N/A N/A N/A N/A N/A 0.315±0.00 N/A N/A N/A N/A 1.848±0.00 2.933±0.00 N/A 1.673±0.00
ENST00000431374 N/A N/A N/A 1.720±0.00 N/A N/A N/A N/A N/A N/A N/A 7.427±0.00 N/A 4.960±0.00
ENST00000537971 3.933±0.00 6.734±0.00 1.179±0.00 1.542±0.00 7.368±0.00 3.788±0.00 10.886±0.00 7.917±5.73 5.309±3.49 15.201±0.00 2.287±0.00 5.876±1.99 10.228±0.00 9.341±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003XN CIL_0003XN_0002 CGP 12:3077355-3593973

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005886 IDA plasma membrane
GO:0005925 IDA focal adhesion
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0097197 IDA tetraspanin-enriched microdomain

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025299 tspan9a tetraspanin 9a protein_coding Danio_rerio
ENSDARG00000045706 tspan9b tetraspanin 9b protein_coding Danio_rerio
ENSMUSG00000030352 Tspan9 tetraspanin 9 protein_coding Mus_musculus

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