C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003XN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000025299-ENSDARG00000040633 CGP 7955 18:10464239-11003852
GeneTranscriptPositionBiotype
ENSDARG00000040633 (CABZ01016567.1)
Uncharacterized protein 		ENSDART00000121647 (CABZ01016567.1-201) 10955469-11003852 protein_coding
ENSDARG00000094024 (si:dkey-101p2.2)
si:dkey-101p2.2 		ENSDART00000138564 (si:dkey-101p2.2-001) 10729629-10765017 processed_transcript
CIL_0003XN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000011105-ENSG00000111218 CGP 9606 12:3077355-3593973
GeneTranscriptPositionBiotype
ENSG00000011105 (TSPAN9)
tetraspanin 9 		ENST00000011898 (TSPAN9-001) 3077377-3286558 protein_coding
ENST00000407263 (TSPAN9-003) 3201175-3282108 protein_coding
ENST00000431374 (TSPAN9-006) 3215251-3281281 processed_transcript
ENST00000444315 (TSPAN9-005) 3077377-3279006 nonsense_mediated_decay
ENST00000492305 (TSPAN9-002) 3272912-3280471 processed_transcript
ENST00000537971 (TSPAN9-201) 3077355-3286564 protein_coding
ENST00000539631 (TSPAN9-004) 3077428-3084210 retained_intron
ENSG00000227081 (RP11-543P15.1)
 ENST00000495392 (RP11-543P15.1-001) 3211663-3211917 processed_pseudogene
ENSG00000236908 (RP5-1063M23.2)
 ENST00000432994 (RP5-1063M23.2-001) 3318718-3325343 lincRNA
ENST00000543036 (RP5-1063M23.2-002) 3319441-3325340 lincRNA
ENSG00000243507 (RP11-476M19.1)
 ENST00000468701 (RP11-476M19.1-001) 3468950-3469296 processed_pseudogene
ENSG00000250770 (RP5-1063M23.1)
 ENST00000505276 (RP5-1063M23.1-001) 3296202-3300224 lincRNA
ENSG00000256197 (TSPAN9-IT1)
TSPAN9 intronic transcript 1 (non-protein coding) 		ENST00000539784 (TSPAN9-IT1-001) 3149797-3151476 sense_intronic
ENSG00000256691 (RP11-476M19.3)
 ENST00000546078 (RP11-476M19.3-001) 3462718-3463586 antisense
ENSG00000257048 (RP11-476M19.2)
 ENST00000542449 (RP11-476M19.2-001) 3367833-3371346 lincRNA
ENSG00000275850 (RP11-543P15.3)
 ENST00000619492 (RP11-543P15.3-001) 3171657-3174056 sense_intronic
ENSG00000278469 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000620330 (Metazoa_SRP.1-474) 3124777-3125063 misc_RNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003XN_0001ENSDARG00000040633ENSDART00000121647ENSDARG00000094024ENSDART00000138564CIL_0003XN_0002ENSG00000011105ENST00000011898ENST00000407263ENST00000431374ENST00000444315ENST00000492305ENST00000537971ENST00000539631ENSG00000227081ENST00000495392ENSG00000236908ENST00000432994ENST00000543036ENSG00000243507ENST00000468701ENSG00000250770ENST00000505276ENSG00000256197ENST00000539784ENSG00000256691ENST00000546078ENSG00000257048ENST00000542449ENSG00000275850ENST00000619492ENSG00000278469ENST00000620330
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003XN_0001ENSDARG00000040633ENSDART00000121647ENSDARG00000094024ENSDART00000138564CIL_0003XN_0002ENSG00000011105ENST00000011898ENST00000407263ENST00000431374ENST00000537971ENSG00000227081ENST00000495392ENSG00000236908ENST00000432994ENST00000543036ENSG00000243507ENST00000468701ENSG00000250770ENST00000505276ENSG00000256197ENST00000539784ENSG00000256691ENST00000546078ENSG00000257048ENST00000542449ENSG00000275850ENST00000619492ENSG00000278469ENST00000620330
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000040633 ENSDART00000121647 N/A N/A N/A 4.123±3.07 N/A N/A 0.426±0.13 0.049±0.04 0.047±0.00 N/A 0.540±0.00 N/A N/A N/A
ENSDARG00000094024 ENSDART00000138564 N/A N/A N/A 34.706±14.61 N/A N/A 139.845±138.94 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000011105 ENST00000011898 17.313±0.00 6.127±0.00 N/A 1.575±1.13 5.452±0.00 9.620±0.00 7.089±0.00 5.936±3.55 5.398±0.00 10.684±0.00 0.614±0.00 9.351±6.22 34.041±6.97 3.075±0.43
ENST00000407263 N/A N/A N/A N/A N/A 0.315±0.00 N/A N/A N/A N/A 1.848±0.00 2.933±0.00 N/A 1.673±0.00
ENST00000431374 N/A N/A N/A 1.720±0.00 N/A N/A N/A N/A N/A N/A N/A 7.427±0.00 N/A 4.960±0.00
ENST00000444315 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492305 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537971 3.933±0.00 6.734±0.00 1.179±0.00 1.542±0.00 7.368±0.00 3.788±0.00 10.886±0.00 7.917±5.73 5.309±3.49 15.201±0.00 2.287±0.00 5.876±1.99 10.228±0.00 9.341±0.00
ENST00000539631 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000227081 ENST00000495392 0.196±0.00 N/A 1.757±0.00 0.881±0.00 1.048±0.00 0.317±0.00 0.393±0.00 0.233±0.16 1.224±1.10 0.579±0.00 0.179±0.00 1.007±0.61 0.403±0.10 N/A
ENSG00000236908 ENST00000432994 N/A 0.028±0.00 0.043±0.00 0.025±0.00 N/A 0.048±0.04 0.045±0.04 0.023±0.00 N/A N/A N/A 0.184±0.11 0.014±0.00 0.018±0.00
ENST00000543036 N/A N/A N/A N/A N/A N/A 0.015±0.00 N/A N/A N/A N/A N/A N/A 0.044±0.00
ENSG00000243507 ENST00000468701 0.046±0.00 N/A N/A 0.049±0.00 0.049±0.00 N/A N/A N/A 0.042±0.00 0.045±0.00 N/A 0.669±0.00 N/A 0.129±0.00
ENSG00000250770 ENST00000505276 0.083±0.00 0.192±0.00 0.461±0.00 0.389±0.34 0.119±0.08 0.053±0.00 0.110±0.09 0.141±0.00 0.122±0.00 0.133±0.08 N/A 0.050±0.02 N/A 0.095±0.01
ENSG00000256197 ENST00000539784 N/A N/A 0.676±0.00 0.067±0.00 N/A 0.629±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000256691 ENST00000546078 N/A N/A N/A N/A 0.118±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.577±0.51
ENSG00000257048 ENST00000542449 N/A N/A N/A N/A N/A N/A N/A 0.761±0.00 N/A 0.084±0.00 N/A 0.069±0.02 N/A 0.089±0.00
ENSG00000275850 ENST00000619492 0.023±0.00 0.207±0.00 1.136±0.00 0.026±0.00 0.224±0.20 0.022±0.00 0.032±0.01 0.084±0.03 0.064±0.06 0.569±0.00 N/A 0.071±0.03 N/A N/A
ENSG00000278469 ENST00000620330 0.182±0.00 1.539±0.00 N/A 0.632±0.00 0.445±0.00 0.231±0.00 0.625±0.00 0.703±0.00 0.452±0.00 1.061±0.00 0.519±0.00 0.288±0.00 N/A 0.571±0.24

Loading