C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetraspanin 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000011898 TSPAN9-001 ENSG00000011105 9606 + 12:3077377-3286558 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000011898
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000011898 17.313±0.00 6.127±0.00 1.575±1.13 5.452±0.00 9.620±0.00 7.089±0.00 5.936±3.55 5.398±0.00 10.684±0.00 0.614±0.00 9.351±6.22 34.041±6.97 3.075±0.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003XN CIL_0003XN_0002 CGP 12:3077355-3593973

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005886 IDA plasma membrane
GO:0005925 IDA focal adhesion
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0097197 IDA tetraspanin-enriched microdomain

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112171 Tspan9-002 protein_coding Mus_musculus 0 1184
ENSMUST00000112173 Tspan9-001 protein_coding Mus_musculus 0 1182
ENSMUST00000032503 Tspan9-003 protein_coding Mus_musculus 0 1046
ENSMUST00000123786 Tspan9-009 protein_coding Mus_musculus 0 723
ENSMUST00000154375 Tspan9-008 protein_coding Mus_musculus 0 551
ENSMUST00000146268 Tspan9-004 protein_coding Mus_musculus 0 544
ENSMUST00000127105 Tspan9-005 protein_coding Mus_musculus 0 294

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