C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB GTPase activating protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000011454 RABGAP1 9606 + 9:122940833-123104866 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000317419 RABGAP1-002 122941020-122990769 retained_intron
  ENST00000373647 RABGAP1-001 122941009-123104866 protein_coding
  ENST00000402311 RABGAP1-006 122941033-122984671 protein_coding
  ENST00000426918 RABGAP1-003 122941090-122997335 nonsense_mediated_decay
  ENST00000456584 RABGAP1-005 122940833-123103268 nonsense_mediated_decay
  ENST00000459903 RABGAP1-007 122941020-122986416 processed_transcript
  ENST00000468760 RABGAP1-010 123033685-123034684 processed_transcript
  ENST00000474707 RABGAP1-012 123073560-123076999 retained_intron
  ENST00000475607 RABGAP1-011 123033667-123074317 processed_transcript
  ENST00000480054 RABGAP1-004 123089552-123097753 retained_intron
  ENST00000485090 RABGAP1-008 122990163-122996320 retained_intron
  ENST00000493854 RABGAP1-009 123033509-123074310 processed_transcript
  ENST00000616002 RABGAP1-201 123033643-123035665 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373647ENST00000426918ENST00000456584
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373647 6.059±0.00 5.127±0.00 5.271±0.41 5.825±1.45 3.774±0.07 2.652±0.91 5.425±0.00 4.587±3.46 5.623±0.48 5.842±3.04 6.277±3.79 2.831±1.16 10.266±0.00
ENST00000426918 N/A N/A N/A N/A N/A N/A 2.893±0.00 N/A N/A N/A N/A N/A N/A
ENST00000456584 N/A N/A N/A N/A N/A 0.359±0.00 N/A 1.774±0.00 N/A N/A 2.145±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006WQ CIL_0006WQ_0001 CGP 9:122915566-123104866

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0004930 IEA G-protein coupled receptor activity
GO:0005096 IDA GTPase activator activity
GO:0005097 IEA Rab GTPase activator activity
GO:0005515 IPI:IEA protein binding
GO:0005813 TAS centrosome
GO:0005829 IDA cytosol
GO:0005875 TAS microtubule associated complex
GO:0005887 TAS integral component of plasma membrane
GO:0007049 IEA cell cycle
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0015631 TAS tubulin binding
GO:0016021 IEA integral component of membrane
GO:0017137 IPI Rab GTPase binding
GO:0032313 IEA regulation of Rab GTPase activity
GO:0032851 IEA positive regulation of Rab GTPase activity
GO:0033124 IDA regulation of GTP catabolic process
GO:0043547 TAS positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010297 RABGAP1 RAB GTPase activating protein 1 protein_coding Danio_rerio
ENSMUSG00000035437 Rabgap1 RAB GTPase activating protein 1 protein_coding Mus_musculus

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