C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000012171 SEMA3B 9606 + 3:50267558-50277546 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000416295 SEMA3B-015 50274634-50276444 retained_intron
  ENST00000418576 SEMA3B-007 50273160-50276876 protein_coding
  ENST00000419007 SEMA3B-008 50273346-50277161 retained_intron
  ENST00000433753 SEMA3B-016 50269169-50277142 protein_coding
  ENST00000434030 SEMA3B-013 50273152-50274340 retained_intron
  ENST00000439487 SEMA3B-012 50273130-50274530 retained_intron
  ENST00000441915 SEMA3B-004 50270561-50277170 retained_intron
  ENST00000456210 SEMA3B-006 50273157-50277546 processed_transcript
  ENST00000456560 SEMA3B-005 50273119-50277165 protein_coding
  ENST00000611067 SEMA3B-009 50269214-50276706 protein_coding
  ENST00000611418 SEMA3B-201 50269185-50277139 protein_coding
  ENST00000612509 SEMA3B-011 50269165-50273680 retained_intron
  ENST00000616701 SEMA3B-001 50269006-50277179 protein_coding
  ENST00000618865 SEMA3B-202 50267608-50277139 protein_coding
  ENST00000619119 SEMA3B-002 50268874-50277139 retained_intron
  ENST00000621029 SEMA3B-010 50267558-50271458 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000416295ENST00000419007ENST00000433753ENST00000441915ENST00000456560ENST00000611067ENST00000611418ENST00000612509ENST00000616701ENST00000618865ENST00000619119ENST00000621029
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000416295 N/A N/A N/A N/A N/A N/A 0.327±0.00 N/A N/A N/A N/A 1.199±0.00 N/A N/A
ENST00000419007 N/A N/A N/A 9.577±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433753 N/A 1.588±0.00 1.079±0.00 13.548±12.58 N/A 8.568±0.00 N/A 20.678±0.00 0.841±0.00 20.140±18.49 N/A 11.930±0.47 32.231±15.36 1.884±0.00
ENST00000441915 N/A N/A N/A 8.002±7.40 0.386±0.00 N/A 1.286±0.00 N/A N/A 5.500±4.70 0.449±0.00 9.415±0.00 N/A N/A
ENST00000456560 N/A N/A N/A N/A N/A N/A N/A 8.159±0.00 N/A N/A 0.129±0.00 N/A 105.475±0.00 2.701±0.00
ENST00000611067 0.683±0.00 N/A 2.779±0.00 1.300±0.00 0.525±0.00 1.963±0.00 N/A N/A N/A 1.816±0.00 N/A N/A N/A N/A
ENST00000611418 1.251±0.00 N/A N/A N/A 19.449±0.00 7.126±0.00 4.270±0.00 N/A 0.129±0.00 N/A N/A 1.867±0.00 67.690±56.22 2.955±0.00
ENST00000612509 N/A N/A N/A N/A N/A 1.659±0.00 0.233±0.00 N/A 0.131±0.00 N/A 0.702±0.00 0.513±0.00 N/A N/A
ENST00000616701 0.738±0.00 N/A N/A 1.236±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 11.806±0.00 N/A
ENST00000618865 N/A 0.724±0.00 N/A N/A N/A 3.231±0.00 N/A 4.926±0.00 0.702±0.62 15.491±0.00 0.403±0.00 8.346±5.42 23.070±0.00 7.468±0.00
ENST00000619119 N/A N/A N/A N/A 0.459±0.00 0.703±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621029 N/A N/A N/A 15.851±14.39 0.787±0.00 N/A 0.535±0.00 0.350±0.00 N/A N/A 0.216±0.00 N/A N/A 6.339±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IEA protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0007267 TAS cell-cell signaling
GO:0007275 IEA multicellular organismal development
GO:0007411 TAS axon guidance
GO:0016020 IEA membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011672 SEMA3B sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B protein_coding Danio_rerio
ENSMUSG00000057969 Sema3b sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B protein_coding Mus_musculus

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