C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000433753 SEMA3B-016 ENSG00000012171 9606 + 3:50269169-50277142 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonKidneyLiverLungOvaryPlacentaTestisENST00000433753
Transcript ID Adrenal Bladder Brain Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000433753 1.588±0.00 1.079±0.00 13.548±12.58 8.568±0.00 20.678±0.00 0.841±0.00 20.140±18.49 11.930±0.47 32.231±15.36 1.884±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IEA protein binding
GO:0007275 IEA multicellular organismal development
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000073448 Sema3b-201 protein_coding Mus_musculus 0 2180
ENSMUST00000102531 Sema3b-002 protein_coding Mus_musculus 0 2180
ENSMUST00000102529 Sema3b-005 protein_coding Mus_musculus 0 2180
ENSMUST00000102530 Sema3b-003 protein_coding Mus_musculus 0 2180
ENSMUST00000102532 Sema3b-001 protein_coding Mus_musculus 0 2180
ENSMUST00000123926 Sema3b-004 nonsense_mediated_decay Mus_musculus 0 1585

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