C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000618865 SEMA3B-202 ENSG00000012171 9606 + 3:50267608-50277139 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000618865
Transcript ID Adrenal Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000618865 0.724±0.00 3.231±0.00 4.926±0.00 0.702±0.62 15.491±0.00 0.403±0.00 8.346±5.42 23.070±0.00 7.468±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IEA protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0007267 TAS cell-cell signaling
GO:0007275 IEA multicellular organismal development
GO:0007411 TAS axon guidance
GO:0016020 IEA membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102529 Sema3b-005 protein_coding Mus_musculus 0 2209
ENSMUST00000073448 Sema3b-201 protein_coding Mus_musculus 0 2202
ENSMUST00000102531 Sema3b-002 protein_coding Mus_musculus 0 2202
ENSMUST00000102530 Sema3b-003 protein_coding Mus_musculus 0 2202
ENSMUST00000102532 Sema3b-001 protein_coding Mus_musculus 0 2202
ENSMUST00000123926 Sema3b-004 nonsense_mediated_decay Mus_musculus 0 1609

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