C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000057969 Sema3b 10090 - 9:107597674-107609229 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000073448 Sema3b-201 107598354-107606656 protein_coding
  ENSMUST00000102529 Sema3b-005 107598355-107605402 protein_coding
  ENSMUST00000102530 Sema3b-003 107598355-107607049 protein_coding
  ENSMUST00000102531 Sema3b-002 107598355-107609193 protein_coding
  ENSMUST00000102532 Sema3b-001 107598217-107609229 protein_coding
  ENSMUST00000123926 Sema3b-004 107597674-107605521 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000073448ENSMUST00000102529ENSMUST00000102530ENSMUST00000102531ENSMUST00000102532ENSMUST00000123926
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000073448 1.582±0.08 1.380±0.00 3.161±0.00 N/A 3.803±1.40 N/A 2.458±0.00 6.039±0.66 0.232±0.12 6.233±1.47 1.584±0.90 N/A 1.350±0.03 N/A
ENSMUST00000102529 1.560±0.65 1.615±0.61 17.078±4.41 0.953±0.19 3.145±0.60 35.104±7.64 1.610±0.12 10.937±2.08 0.183±0.06 7.510±0.88 1.729±0.00 6.424±2.52 2.547±1.54 0.556±0.29
ENSMUST00000102530 1.657±0.43 0.571±0.09 N/A N/A 1.711±0.21 N/A 4.279±0.16 3.532±0.50 0.153±0.15 5.490±0.92 0.761±0.24 0.763±0.00 2.310±2.01 0.103±0.00
ENSMUST00000102531 1.980±0.00 1.712±0.77 N/A 0.262±0.00 3.713±2.01 N/A N/A 8.201±4.87 0.264±0.00 8.008±2.32 1.783±0.60 3.066±0.79 2.065±0.00 0.440±0.25
ENSMUST00000102532 2.118±0.69 0.514±0.00 7.888±2.02 0.314±0.00 2.384±0.19 N/A 3.082±0.47 4.663±0.42 0.171±0.12 8.848±2.12 1.192±0.19 2.219±0.46 1.479±0.98 N/A
ENSMUST00000123926 N/A N/A N/A 0.376±0.23 N/A N/A N/A N/A N/A N/A 0.544±0.15 0.876±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D8 CIL_0008D8_0002 VISTA 9:107005935-107609958

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0007275 IEA multicellular organismal development
GO:0016020 IEA membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011672 SEMA3B sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B protein_coding Danio_rerio
ENSG00000012171 SEMA3B sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B protein_coding Homo_sapiens

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