C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polymerase (RNA) III (DNA directed) polypeptide B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000013503 POLR3B 9606 + 12:106357658-106510198 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000228347 POLR3B-001 106357658-106510198 protein_coding
  ENST00000539066 POLR3B-003 106358082-106510196 protein_coding
  ENST00000549195 POLR3B-005 106410244-106427267 processed_transcript
  ENST00000549569 POLR3B-004 106381972-106427330 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000228347ENST00000539066
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000228347 0.835±0.00 1.115±0.00 1.025±0.00 1.905±0.47 1.670±0.30 1.328±0.26 1.523±0.57 1.011±0.00 2.070±0.59 0.703±0.00 0.736±0.02 2.244±1.50 2.841±1.18 2.195±0.52
ENST00000539066 N/A 0.714±0.00 0.749±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003I4 CIL_0003I4_0001 CGP 12:106301929-106510198
CIL_00028K CIL_00028K_0001 CGP 12:106357658-106762803

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0005654 TAS nucleoplasm
GO:0005666 IDA DNA-directed RNA polymerase III complex
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006383 TAS transcription from RNA polymerase III promoter
GO:0006385 TAS transcription elongation from RNA polymerase III promoter
GO:0006386 TAS termination of RNA polymerase III transcription
GO:0010467 TAS gene expression
GO:0032481 TAS positive regulation of type I interferon production
GO:0032549 IEA ribonucleoside binding
GO:0032728 IMP positive regulation of interferon-beta production
GO:0045087 TAS innate immune response
GO:0045089 IMP positive regulation of innate immune response
GO:0046872 IEA metal ion binding
GO:0051607 IEA defense response to virus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062915 polr3b polymerase (RNA) III (DNA directed) polypeptide B protein_coding Danio_rerio
ENSMUSG00000034453 Polr3b polymerase (RNA) III (DNA directed) polypeptide B protein_coding Mus_musculus

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