C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003I4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000166046-ENSG00000013503 CGP 9606 12:106301929-106510198
GeneTranscriptPositionBiotype
ENSG00000013503 (POLR3B)
polymerase (RNA) III (DNA directed) polypeptide B 		ENST00000228347 (POLR3B-001) 106357658-106510198 protein_coding
ENST00000539066 (POLR3B-003) 106358082-106510196 protein_coding
ENST00000549195 (POLR3B-005) 106410244-106427267 processed_transcript
ENST00000549569 (POLR3B-004) 106381972-106427330 protein_coding
ENSG00000136026 (CKAP4)
cytoskeleton-associated protein 4 		ENST00000378026 (CKAP4-001) 106237877-106247988 protein_coding
ENST00000552828 (CKAP4-007) 106239894-106304251 processed_transcript
ENST00000553039 (CKAP4-006) 106240322-106304279 protein_coding
ENSG00000166046 (TCP11L2)
t-complex 11, testis-specific-like 2 		ENST00000299045 (TCP11L2-001) 106302803-106347015 protein_coding
ENST00000546625 (TCP11L2-004) 106302818-106325913 protein_coding
ENST00000547153 (TCP11L2-002) 106302803-106330171 protein_coding
ENST00000548428 (TCP11L2-005) 106303493-106314493 protein_coding
ENST00000549906 (TCP11L2-008) 106302853-106314468 nonsense_mediated_decay
ENST00000551228 (TCP11L2-006) 106303865-106311128 protein_coding
ENST00000551802 (TCP11L2-009) 106303060-106318445 protein_coding
ENST00000552690 (TCP11L2-010) 106321574-106324056 processed_transcript
ENST00000553098 (TCP11L2-007) 106302833-106323576 protein_coding
ENST00000553143 (TCP11L2-003) 106301929-106311128 protein_coding
CIL_0003I4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020034-ENSMUSG00000034453 CGP 10090 10:84576626-84727177
GeneTranscriptPositionBiotype
ENSMUSG00000020034 (Tcp11l2)
t-complex 11 (mouse) like 2 		ENSMUST00000020223 (Tcp11l2-001) 84576626-84614359 protein_coding
ENSMUST00000160057 (Tcp11l2-003) 84594653-84604990 retained_intron
ENSMUST00000162874 (Tcp11l2-002) 84576897-84595300 retained_intron
ENSMUSG00000034453 (Polr3b)
polymerase (RNA) III (DNA directed) polypeptide B 		ENSMUST00000077175 (Polr3b-201) 84622437-84727177 protein_coding
ENSMUSG00000097309 (Gm17249)
predicted gene, 17249 		ENSMUST00000181277 (Gm17249-201) 84619332-84622578 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003I4_0001ENSG00000013503ENST00000228347ENST00000539066ENST00000549195ENST00000549569ENSG00000136026ENST00000378026ENST00000552828ENST00000553039ENSG00000166046ENST00000299045ENST00000546625ENST00000547153ENST00000548428ENST00000549906ENST00000551228ENST00000551802ENST00000552690ENST00000553098ENST00000553143CIL_0003I4_0002ENSMUSG00000020034ENSMUST00000020223ENSMUST00000160057ENSMUST00000162874ENSMUSG00000034453ENSMUST00000077175ENSMUSG00000097309ENSMUST00000181277
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003I4_0001ENSG00000013503ENST00000228347ENST00000539066ENSG00000136026ENST00000378026ENSG00000166046ENST00000299045CIL_0003I4_0002ENSMUSG00000020034ENSMUST00000020223ENSMUST00000160057ENSMUST00000162874ENSMUSG00000034453ENSMUST00000077175ENSMUSG00000097309ENSMUST00000181277
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000013503 ENST00000228347 0.835±0.00 1.115±0.00 1.025±0.00 1.905±0.47 1.670±0.30 1.328±0.26 1.523±0.57 1.011±0.00 2.070±0.59 0.703±0.00 0.736±0.02 2.244±1.50 2.841±1.18 2.195±0.52
ENST00000539066 N/A 0.714±0.00 0.749±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549195 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000136026 ENST00000378026 31.078±0.00 26.572±0.00 2.113±0.00 7.090±5.67 11.373±5.71 13.727±10.00 10.508±7.62 17.318±14.64 13.051±7.05 20.935±17.61 7.481±0.00 29.772±21.41 62.340±3.19 17.509±11.98
ENST00000552828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553039 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000166046 ENST00000299045 N/A N/A N/A 2.145±0.80 4.621±0.00 3.308±0.69 7.485±0.00 1.573±0.00 3.282±0.00 4.812±0.19 2.680±0.00 4.657±0.00 N/A 2.369±0.00
ENST00000546625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547153 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548428 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549906 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551228 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551802 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553098 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553143 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020034 ENSMUST00000020223 8.295±0.81 2.988±0.72 13.322±0.34 3.844±2.30 8.402±3.56 2.639±0.53 25.444±1.00 5.836±0.75 14.323±10.94 11.718±1.80 13.345±1.16 8.227±5.75 2.736±1.93 3.662±1.83
ENSMUST00000160057 N/A N/A N/A 2.464±0.00 N/A N/A N/A N/A N/A N/A N/A 4.361±0.00 2.886±1.20 N/A
ENSMUST00000162874 11.574±3.63 23.757±2.08 N/A 0.970±0.66 27.354±8.76 8.700±5.40 25.485±7.89 5.891±1.55 7.193±0.83 31.263±2.64 N/A 59.578±31.41 N/A 2.006±0.99
ENSMUSG00000034453 ENSMUST00000077175 3.232±1.11 1.660±0.47 3.286±0.60 4.098±1.39 1.909±0.71 1.664±0.58 1.445±0.46 2.034±0.46 2.644±1.18 3.252±0.26 2.353±0.22 3.230±2.24 5.868±2.16 2.427±0.28
ENSMUSG00000097309 ENSMUST00000181277 N/A N/A 1.119±0.00 N/A N/A N/A N/A N/A 0.697±0.00 N/A N/A N/A N/A N/A

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