C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) III (DNA directed) polypeptide B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000228347 POLR3B-001 ENSG00000013503 9606 + 12:106357658-106510198 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000228347
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000228347 0.835±0.00 1.115±0.00 1.025±0.00 1.905±0.47 1.670±0.30 1.328±0.26 1.523±0.57 1.011±0.00 2.070±0.59 0.703±0.00 0.736±0.02 2.244±1.50 2.841±1.18 2.195±0.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003I4 CIL_0003I4_0001 CGP 12:106301929-106510198
CIL_00028K CIL_00028K_0001 CGP 12:106357658-106762803

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0005654 TAS nucleoplasm
GO:0005666 IDA DNA-directed RNA polymerase III complex
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006383 TAS transcription from RNA polymerase III promoter
GO:0006385 TAS transcription elongation from RNA polymerase III promoter
GO:0006386 TAS termination of RNA polymerase III transcription
GO:0010467 TAS gene expression
GO:0032481 TAS positive regulation of type I interferon production
GO:0032549 IEA ribonucleoside binding
GO:0032728 IMP positive regulation of interferon-beta production
GO:0045087 TAS innate immune response
GO:0045089 IMP positive regulation of innate immune response
GO:0046872 IEA metal ion binding
GO:0051607 IEA defense response to virus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077175 Polr3b-201 protein_coding Mus_musculus 0 4300

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